More than 300 homologs were found in PanDaTox collection
for query gene SaurJH9_1006 on replicon NC_009487
Organism: Staphylococcus aureus subsp. aureus JH9



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009632  SaurJH1_1025  RluA family pseudouridine synthase  100 
 
 
284 aa  582  1.0000000000000001e-165  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.0048799  n/a   
 
 
-
 
NC_009487  SaurJH9_1006  RluA family pseudouridine synthase  100 
 
 
284 aa  582  1.0000000000000001e-165  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00919556  n/a   
 
 
-
 
NC_002976  SERP0588  ribosomal large subunit pseudouridine synthase D  59.51 
 
 
284 aa  356  1.9999999999999998e-97  Staphylococcus epidermidis RP62A  Bacteria  normal  0.900058  n/a   
 
 
-
 
NC_012793  GWCH70_0777  pseudouridine synthase, RluA family  39.1 
 
 
298 aa  204  1e-51  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1632  pseudouridine synthase, RluA family  39.3 
 
 
304 aa  181  9.000000000000001e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A1255  ribosomal large subunit pseudouridine synthase, RluA family  37.24 
 
 
297 aa  177  1e-43  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1322  ribosomal large subunit pseudouridine synthase D  37.77 
 
 
297 aa  175  6e-43  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0916  RluA family pseudouridine synthase  37.5 
 
 
297 aa  175  6e-43  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1284  ribosomal large subunit pseudouridine synthase, RluA family  36.55 
 
 
292 aa  175  7e-43  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_1288  RluA family pseudouridine synthase  36.53 
 
 
285 aa  174  1.9999999999999998e-42  Thermoanaerobacter sp. X514  Bacteria  normal  0.543506  n/a   
 
 
-
 
NC_005957  BT9727_1103  ribosomal large subunit pseudouridylate synthase D  36.9 
 
 
297 aa  174  1.9999999999999998e-42  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1097  pseudouridylate synthase (pseudouridine synthase)  37.77 
 
 
297 aa  173  1.9999999999999998e-42  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1110  RluA family pseudouridine synthase  36.92 
 
 
297 aa  174  1.9999999999999998e-42  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4086  ribosomal large subunit pseudouridine synthase, RluA family  38.81 
 
 
275 aa  172  3.9999999999999995e-42  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS1121  pseudouridine synthetase  36.9 
 
 
297 aa  172  5e-42  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1214  ribosomal large subunit pseudouridine synthase  36.9 
 
 
297 aa  172  5e-42  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1093  ribosomal large subunit pseudouridine synthase D  38.7 
 
 
294 aa  172  7.999999999999999e-42  Streptococcus agalactiae 2603V/R  Bacteria  decreased coverage  0.000312184  n/a   
 
 
-
 
NC_011658  BCAH187_A1360  ribosomal large subunit pseudouridine synthase, RluA family  36.69 
 
 
297 aa  169  4e-41  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0680  pseudouridylate synthase, 23S RNA-specific  36.56 
 
 
299 aa  155  9e-37  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0410  pseudouridylate synthase, 23S RNA-specific  34.95 
 
 
293 aa  153  2e-36  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1421  ribosomal large subunit pseudouridine synthase, RluD subfamily  38.27 
 
 
298 aa  154  2e-36  Streptococcus thermophilus LMD-9  Bacteria  decreased coverage  0.00665782  n/a   
 
 
-
 
NC_008528  OEOE_1158  pseudouridylate synthase, 23S RNA-specific  34.05 
 
 
299 aa  148  9e-35  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2289  pseudouridine synthase, RluA family  33.46 
 
 
310 aa  148  9e-35  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.677026 
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  32.64 
 
 
305 aa  146  4.0000000000000006e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1348  RluA family pseudouridine synthase  33.09 
 
 
303 aa  146  5e-34  Desulfotomaculum reducens MI-1  Bacteria  normal  0.628416  n/a   
 
 
-
 
NC_012034  Athe_1413  pseudouridine synthase, RluA family  36.55 
 
 
293 aa  144  2e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0119542  n/a   
 
 
-
 
NC_008530  LGAS_1352  pseudouridylate synthase, 23S RNA-specific  32.5 
 
 
299 aa  142  6e-33  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000522959  normal 
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  35.07 
 
 
307 aa  137  3.0000000000000003e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0252  RluA family pseudouridine synthase  34.66 
 
 
298 aa  136  4e-31  Methanococcus maripaludis C7  Archaea  normal  normal  0.995369 
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  33.99 
 
 
304 aa  135  6.0000000000000005e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_1100  pseudouridine synthase, RluA family  34.34 
 
 
297 aa  135  7.000000000000001e-31  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009455  DehaBAV1_1186  ribosomal large subunit pseudouridine synthase D  29.35 
 
 
300 aa  134  9.999999999999999e-31  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204845  n/a   
 
 
-
 
NC_010718  Nther_1324  pseudouridine synthase, RluA family  30.71 
 
 
328 aa  134  1.9999999999999998e-30  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0803  RluA family pseudouridine synthase  30.84 
 
 
318 aa  134  3e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0330464  n/a   
 
 
-
 
NC_009135  MmarC5_0584  RluA family pseudouridine synthase  33.33 
 
 
298 aa  133  3e-30  Methanococcus maripaludis C5  Archaea  normal  0.460121  n/a   
 
 
-
 
NC_006055  Mfl387  23S rRNA/tRNA pseudouridine synthase  34.59 
 
 
311 aa  132  5e-30  Mesoplasma florum L1  Bacteria  normal  0.319286  n/a   
 
 
-
 
NC_009975  MmarC6_1649  RluA family pseudouridine synthase  33.6 
 
 
297 aa  132  6.999999999999999e-30  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_010424  Daud_0949  RluA family pseudouridine synthase  33.09 
 
 
309 aa  132  7.999999999999999e-30  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1156  ribosomal large subunit pseudouridine synthase, RluD subfamily  30.14 
 
 
302 aa  132  7.999999999999999e-30  Dehalococcoides sp. VS  Bacteria  normal  0.0116106  n/a   
 
 
-
 
NC_002936  DET1375  ribosomal large subunit pseudouridine synthase D  30.58 
 
 
300 aa  131  1.0000000000000001e-29  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000447138  n/a   
 
 
-
 
NC_012034  Athe_1372  pseudouridine synthase, RluA family  30.61 
 
 
300 aa  131  1.0000000000000001e-29  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  34.78 
 
 
304 aa  131  1.0000000000000001e-29  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_008609  Ppro_3196  RluA family pseudouridine synthase  31.02 
 
 
315 aa  130  2.0000000000000002e-29  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  30.71 
 
 
301 aa  130  3e-29  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_005957  BT9727_1184  ribosomal large subunit pseudouridylate synthase D  33.33 
 
 
307 aa  129  5.0000000000000004e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1633  ribosomal large subunit pseudouridine synthase D  31.62 
 
 
350 aa  129  5.0000000000000004e-29  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.784854  n/a   
 
 
-
 
NC_009253  Dred_0386  RluA family pseudouridine synthase  32.3 
 
 
303 aa  129  7.000000000000001e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1186  ribosomal large subunit pseudouridine synthase D  33.33 
 
 
307 aa  129  8.000000000000001e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0574  RluA family pseudouridine synthase  34.96 
 
 
301 aa  129  8.000000000000001e-29  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000115636  n/a   
 
 
-
 
NC_010320  Teth514_1821  RluA family pseudouridine synthase  32.96 
 
 
305 aa  128  9.000000000000001e-29  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0989  RluA family pseudouridine synthase  33.09 
 
 
306 aa  127  1.0000000000000001e-28  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.00899774  n/a   
 
 
-
 
NC_009634  Mevan_0337  RluA family pseudouridine synthase  31.92 
 
 
297 aa  128  1.0000000000000001e-28  Methanococcus vannielii SB  Archaea  normal  0.0186274  n/a   
 
 
-
 
NC_011658  BCAH187_A1446  ribosomal large subunit pseudouridine synthase, RluA family  33.33 
 
 
307 aa  128  1.0000000000000001e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1208  RluA family pseudouridine synthase  32.95 
 
 
307 aa  127  2.0000000000000002e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_02111  putative pseudouridylate synthase specific to ribosomal large subunit  32.5 
 
 
319 aa  127  2.0000000000000002e-28  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.496147  n/a   
 
 
-
 
NC_011830  Dhaf_2390  pseudouridine synthase, RluA family  32.54 
 
 
302 aa  127  2.0000000000000002e-28  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.837448  n/a   
 
 
-
 
NC_003909  BCE_1405  ribosomal large subunit pseudouridine synthase D  32.57 
 
 
307 aa  127  3e-28  Bacillus cereus ATCC 10987  Bacteria  normal  0.899251  n/a   
 
 
-
 
NC_005945  BAS1206  RNA pseudouridylate synthase  32.95 
 
 
307 aa  127  3e-28  Bacillus anthracis str. Sterne  Bacteria  normal  0.575901  n/a   
 
 
-
 
NC_011773  BCAH820_1382  ribosomal large subunit pseudouridine synthase, RluA family  32.95 
 
 
307 aa  127  3e-28  Bacillus cereus AH820  Bacteria  n/a    normal  0.53631 
 
 
-
 
NC_007530  GBAA_1304  ribosomal large subunit pseudouridine synthase  32.95 
 
 
307 aa  127  3e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  30.83 
 
 
296 aa  127  3e-28  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_009513  Lreu_0929  ribosomal large subunit pseudouridine synthase D  33.08 
 
 
303 aa  127  3e-28  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0908  ribosomal large subunit pseudouridine synthase D  31.66 
 
 
303 aa  126  4.0000000000000003e-28  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00261324  n/a   
 
 
-
 
NC_010483  TRQ2_0473  RluA family pseudouridine synthase  33.46 
 
 
311 aa  126  4.0000000000000003e-28  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1604  pseudouridine synthase, RluA family  34.62 
 
 
331 aa  125  5e-28  Ammonifex degensii KC4  Bacteria  normal  0.357256  n/a   
 
 
-
 
NC_011884  Cyan7425_4642  pseudouridine synthase, RluA family  32.65 
 
 
313 aa  126  5e-28  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.0000189125  normal  0.973939 
 
 
-
 
NC_011772  BCG9842_B4000  ribosomal large subunit pseudouridine synthase, RluA family  32.57 
 
 
307 aa  125  6e-28  Bacillus cereus G9842  Bacteria  normal  normal  0.0122358 
 
 
-
 
NC_010581  Bind_0348  RluA family pseudouridine synthase  29.08 
 
 
346 aa  125  7e-28  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008817  P9515_02221  putative pseudouridylate synthase specific to ribosomal large subunit  32.18 
 
 
320 aa  125  7e-28  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.135305  n/a   
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  30.94 
 
 
302 aa  125  9e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_011661  Dtur_1813  pseudouridine synthase, RluA family  28.52 
 
 
303 aa  124  1e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1521  RluA family pseudouridine synthase  31.29 
 
 
290 aa  124  2e-27  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  27.99 
 
 
296 aa  124  2e-27  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_009632  SaurJH1_1281  RluA family pseudouridine synthase  32.94 
 
 
305 aa  124  2e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.71357  n/a   
 
 
-
 
NC_009486  Tpet_0458  RluA family pseudouridine synthase  33.08 
 
 
311 aa  124  2e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1256  RluA family pseudouridine synthase  32.94 
 
 
305 aa  124  2e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0195  putative pseudouridylate synthase specific to ribosomal large subunit  31.07 
 
 
319 aa  124  2e-27  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.0799995  n/a   
 
 
-
 
NC_009091  P9301_02131  putative pseudouridylate synthase specific to ribosomal large subunit  31.79 
 
 
319 aa  124  2e-27  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3146  ribosomal large subunit pseudouridine synthase D  29.26 
 
 
343 aa  124  2e-27  Chelativorans sp. BNC1  Bacteria  normal  0.19664  n/a   
 
 
-
 
NC_002976  SERP0763  ribosomal large subunit pseudouridine synthase D  33.86 
 
 
305 aa  123  3e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1303  pseudouridine synthase, RluA family  32.38 
 
 
314 aa  123  3e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  31.2 
 
 
302 aa  123  3e-27  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_013037  Dfer_2578  pseudouridine synthase, RluA family  31.09 
 
 
343 aa  123  4e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.728308  normal 
 
 
-
 
NC_013203  Apar_0839  pseudouridine synthase, RluA family  33.33 
 
 
336 aa  123  4e-27  Atopobium parvulum DSM 20469  Bacteria  normal  hitchhiker  0.00962928 
 
 
-
 
NC_008819  NATL1_02691  putative pseudouridylate synthase specific to ribosomal large subunit  30.39 
 
 
326 aa  122  6e-27  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.88343  normal 
 
 
-
 
NC_011206  Lferr_0593  pseudouridine synthase, RluA family  32.14 
 
 
310 aa  122  7e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.070842  normal 
 
 
-
 
NC_011761  AFE_0431  ribosomal large subunit pseudouridine synthase D  32.14 
 
 
319 aa  122  8e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0810  ribosomal large subunit pseudouridine synthase D  28.1 
 
 
318 aa  122  8e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.043607  normal 
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_014248  Aazo_3490  pseudouridine synthase, RluA family  32.12 
 
 
329 aa  121  9.999999999999999e-27  'Nostoc azollae' 0708  Bacteria  normal  0.788611  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  30.57 
 
 
302 aa  121  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  32.14 
 
 
304 aa  121  9.999999999999999e-27  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_007335  PMN2A_1560  putative pseudouridylate synthase specific to ribosomal large subunit  30.04 
 
 
326 aa  120  1.9999999999999998e-26  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1383  pseudouridine synthase, RluA family  31.08 
 
 
299 aa  121  1.9999999999999998e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_3086  pseudouridine synthase, RluA family  30.88 
 
 
341 aa  120  3e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.226558 
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  30.08 
 
 
302 aa  120  3e-26  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
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