| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0839 |
|---|
| Symbol | |
|---|
| ID | 8413705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 930551 |
|---|
| End bp | 931561 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 645022422 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_003179859 |
|---|
| Protein GI | 257784642 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00962928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAGC GTATTGTTGA AATATTAGTT GGGCCAGAAG GAGACAGCGT CAGATTAGAT
GCGTTTCTTT CCGCTCAAGA TATGCTTCCT TCAAGAAGCG CCTGCGTCAA GCTGGTAGAA
GAGGGAAGAG TAACCATCAA CGCCACACTC GCTACTTCTA AGTCAGAAAA ACTTATGTTG
GGCGATAGAC TTTTGGTGTC TCTCCCAAAT GCAGAGTCTC AAACAGGTCT TTTGCGTCCA
AATCCAGACA TTCCACTTGA TATTCGTTTT GAGGATCAGT ACCTCATAGT ACTTTCAAAG
CAGATTGGCC TTGTCTGCCA TCCATCTCCG GGCCATGTTG ATGATACTTT GGCAAATGCT
CTGGTTGCCC ATTGTGGCTA CGAGCATCTA GGAATGCTTC AGGGAGAAGA TCGTCCTGGT
ATTGTGCATC GTCTTGACAT GGATACGTCC GGTCTTATGT TGGCTGTAAA GTCAGATGAG
GCTCAGAAGG CCCTTCAAGA TCTCATCAGG CTGCGCGTAC TTGATCGACG CTACATTGTG
TTGGTGCATG GCTATGTTGC CCATGATTCT GGCACTATTG AAACGGGCAT TGCTCGTTCA
ACGCGAGACC GTCTAAAAAT GACTGTATCT GATGCGCCAG GTGCACGAGA AGCCATTACC
ACCTTTAGGA CGCTTGAGCG CTTTGAGGCA GGTAGAAAAG GCGATGGTTA CTCGCTTCTT
GAGTGTCATC TCTATACAGG TCGCACGCAC CAGATTAGAG TTCACATGCG CCACATCGGA
CATCCTGTTG TTGGCGATCA ACTCTACGGT AAAAAAGACA CAAGTCTTAA TCTTGGTCTT
AATAGACAAT TTCTACACTC TTGGCGTGTT CAGTTTGAGC ACCCTTTTAC AGGCGAGAAT
ATCATAGTGG CAGATACGCT GCCAAAAGAC CTACAAGAAG CACTTATTTC TCAGCAGGAT
ATGTCTATGG GAAGAACAAT AGCAGGAAAA GAAATCTGCC CACAGTTGTA A
|
|---|
| Protein sequence | MNERIVEILV GPEGDSVRLD AFLSAQDMLP SRSACVKLVE EGRVTINATL ATSKSEKLML
GDRLLVSLPN AESQTGLLRP NPDIPLDIRF EDQYLIVLSK QIGLVCHPSP GHVDDTLANA
LVAHCGYEHL GMLQGEDRPG IVHRLDMDTS GLMLAVKSDE AQKALQDLIR LRVLDRRYIV
LVHGYVAHDS GTIETGIARS TRDRLKMTVS DAPGAREAIT TFRTLERFEA GRKGDGYSLL
ECHLYTGRTH QIRVHMRHIG HPVVGDQLYG KKDTSLNLGL NRQFLHSWRV QFEHPFTGEN
IIVADTLPKD LQEALISQQD MSMGRTIAGK EICPQL
|
|---|
| |