| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | STER_1421 |
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| Symbol | |
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| ID | 4438003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Streptococcus thermophilus LMD-9 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008532 |
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| Strand | - |
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| Start bp | 1329610 |
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| End bp | 1330506 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639677028 |
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| Product | ribosomal large subunit pseudouridine synthase, RluD subfamily |
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| Protein accession | YP_820779 |
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| Protein GI | 116628160 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00665782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATATG AATTTACTGT AGGACGTTCA TGTCGAGTTA AAACCTTTTT GAAGGAGCAC
GATATTTCAA AAGGACTTCT AGCCAAAATT AAGTTTGAGG GAGGTCACAT CTGGGTCAAT
GGTGAGGAGC AGTTTGCGAC TTATCCTGTC CATGAGGGAG ACGTGGTTGC CATAGAAATC
CCTGATGAGG CCCCGCATGA AACCTTGAAG CCAATTCCTT TTGACTTGGA TATAGTCTAT
GAGGATGATA ACTTCTTGGT GATTAATAAA CCCTATGGCT ATGCTAGTAT TCCAAGTGTT
AACCATGATA ATACCATGGC TAACTTTGTC AAACATCACT TTGTCAGCAA TAATTATCCC
AACCAGCGTG TCCATATCGT GACACGTTTG GATAAGGACA CATCTGGTCT CATGCTGTTT
GCCAAGCATG GTTACGCCCA TGCTCGTATG GATAAACAGT TACAACAGAA GTCTATAAAA
AAACATTATT ATGCCTTGGT TGAAGGTGAG ACCAAGCTTG AGCAGGAGGG TGAAATCATT
GCACCGATTG CGCGTGATGT GGATTCCATT ATCACACGTC GAGTCCATAA ATCGGGGAAA
TATGCTCACA CTAGTTATCG TTTGGTAGGT GATTATGGTA GGGTTAAACT GGTTGATATC
AATTTGCATA CTGGGCGTAC CCACCAGATT CGTGTCCACT TTGCCCATTT GGGACTCCCC
CTTTTAGGAG ATGACCTTTA TGGTGGTTCT CTAGACTATG GTATTGAGCG CCAGGCCTTG
CATTGCCACC GACTTGCATT TGTTGATCCT TTCACCAAAA AAGAAATGGT CCATGAGTCT
TCCTTGACAG ATGATTTTGA AACCGTTATC ATGGATTTGA AAACTAAAAA AGATTGA
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| Protein sequence | MRYEFTVGRS CRVKTFLKEH DISKGLLAKI KFEGGHIWVN GEEQFATYPV HEGDVVAIEI
PDEAPHETLK PIPFDLDIVY EDDNFLVINK PYGYASIPSV NHDNTMANFV KHHFVSNNYP
NQRVHIVTRL DKDTSGLMLF AKHGYAHARM DKQLQQKSIK KHYYALVEGE TKLEQEGEII
APIARDVDSI ITRRVHKSGK YAHTSYRLVG DYGRVKLVDI NLHTGRTHQI RVHFAHLGLP
LLGDDLYGGS LDYGIERQAL HCHRLAFVDP FTKKEMVHES SLTDDFETVI MDLKTKKD
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