More than 300 homologs were found in PanDaTox collection
for query gene RPC_3948 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4632  binding-protein-dependent transport systems inner membrane component  72.03 
 
 
548 aa  689    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.62056  n/a   
 
 
-
 
NC_007778  RPB_1462  binding-protein-dependent transport systems inner membrane component  73.67 
 
 
545 aa  642    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.501492 
 
 
-
 
NC_007925  RPC_3948  binding-protein-dependent transport systems inner membrane component  100 
 
 
559 aa  1050    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0471935  normal 
 
 
-
 
NC_007958  RPD_1438  binding-protein-dependent transport systems inner membrane component  75.14 
 
 
548 aa  693    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3823  binding-protein-dependent transport systems inner membrane component  44.07 
 
 
569 aa  409  1e-113  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0654  putative iron compound ABC transporter, permease protein  45.52 
 
 
589 aa  402  1e-111  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0699  iron compound ABC transporter, permease protein, putative  45.52 
 
 
589 aa  401  9.999999999999999e-111  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4317  ABC spermidine/putrescine transporter, inner membrane subunit  49.8 
 
 
562 aa  397  1e-109  Burkholderia sp. 383  Bacteria  normal  0.946485  normal  0.426161 
 
 
-
 
NC_010508  Bcenmc03_1182  binding-protein-dependent transport systems inner membrane component  50.98 
 
 
565 aa  389  1e-107  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.086066  normal  0.404722 
 
 
-
 
NC_010084  Bmul_2094  binding-protein-dependent transport systems inner membrane component  51.17 
 
 
562 aa  387  1e-106  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1092  binding-protein-dependent transport systems inner membrane component  50.78 
 
 
558 aa  387  1e-106  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3763  binding-protein-dependent transport systems inner membrane component  48.26 
 
 
582 aa  387  1e-106  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0729  binding-protein-dependent transport systems inner membrane component  50.98 
 
 
562 aa  388  1e-106  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1209  binding-protein-dependent transport systems inner membrane component  50.98 
 
 
562 aa  388  1e-106  Burkholderia cenocepacia HI2424  Bacteria  normal  0.193935  n/a   
 
 
-
 
NC_011757  Mchl_0580  binding-protein-dependent transport systems inner membrane component  48.94 
 
 
550 aa  387  1e-106  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0571  binding-protein-dependent transport systems inner membrane component  48.74 
 
 
550 aa  385  1e-105  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1092  binding-protein-dependent transport systems inner membrane component  50.78 
 
 
558 aa  382  1e-105  Burkholderia ambifaria AMMD  Bacteria  normal  0.867638  n/a   
 
 
-
 
NC_010510  Mrad2831_6289  binding-protein-dependent transport systems inner membrane component  48.1 
 
 
542 aa  381  1e-104  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0544  binding-protein-dependent transport systems inner membrane component  49.33 
 
 
550 aa  368  1e-100  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4446  binding-protein-dependent transport systems inner membrane component  46.09 
 
 
550 aa  366  1e-100  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3700  binding-protein-dependent transport systems inner membrane component  49.52 
 
 
550 aa  364  2e-99  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5860  binding-protein-dependent transport systems inner membrane component  48.93 
 
 
579 aa  362  8e-99  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6368  binding-protein-dependent transport systems inner membrane component  48.26 
 
 
553 aa  362  1e-98  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.725072  n/a   
 
 
-
 
NC_008740  Maqu_1091  binding-protein-dependent transport systems inner membrane component  39 
 
 
562 aa  358  9.999999999999999e-98  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00794358  n/a   
 
 
-
 
NC_008254  Meso_0169  binding-protein-dependent transport systems inner membrane component  43.82 
 
 
566 aa  348  1e-94  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1377  iron ABC transporter permease  47.46 
 
 
570 aa  342  1e-92  Burkholderia pseudomallei 668  Bacteria  normal  0.300501  n/a   
 
 
-
 
NC_009438  Sputcn32_3226  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
544 aa  340  5e-92  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1381  iron ABC transporter permease  47.64 
 
 
570 aa  339  9e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0317  binding-protein-dependent transport systems inner membrane component  40.98 
 
 
570 aa  337  2.9999999999999997e-91  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.931275 
 
 
-
 
NC_006348  BMA1778  iron compound ABC transporter, permease protein, putative  47.1 
 
 
568 aa  337  3.9999999999999995e-91  Burkholderia mallei ATCC 23344  Bacteria  normal  0.370129  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1181  iron ABC transporter permease  47.46 
 
 
570 aa  337  3.9999999999999995e-91  Burkholderia mallei SAVP1  Bacteria  normal  0.881727  n/a   
 
 
-
 
NC_007434  BURPS1710b_1510  ABC transporter, permease protein  47.46 
 
 
570 aa  337  3.9999999999999995e-91  Burkholderia pseudomallei 1710b  Bacteria  normal  0.896954  n/a   
 
 
-
 
NC_008836  BMA10229_A0689  iron ABC transporter permease  47.46 
 
 
570 aa  337  3.9999999999999995e-91  Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000577033  n/a   
 
 
-
 
NC_009080  BMA10247_0463  iron ABC transporter permease  47.46 
 
 
570 aa  337  3.9999999999999995e-91  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2990  binding-protein-dependent transport systems inner membrane component  43.19 
 
 
565 aa  331  2e-89  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0946  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
543 aa  331  2e-89  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0997  binding-protein-dependent transport systems inner membrane component  37.57 
 
 
543 aa  328  2.0000000000000001e-88  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.000511547 
 
 
-
 
NC_007651  BTH_I2857  iron compound ABC transporter, permease protein, putative  47.02 
 
 
548 aa  327  3e-88  Burkholderia thailandensis E264  Bacteria  normal  0.133702  n/a   
 
 
-
 
NC_011729  PCC7424_3626  binding-protein-dependent transport systems inner membrane component  36.31 
 
 
562 aa  325  1e-87  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008321  Shewmr4_3346  binding-protein-dependent transport systems inner membrane component  37.71 
 
 
544 aa  322  8e-87  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0743  iron(III) ABC transporter, permease protein  38.69 
 
 
544 aa  321  3e-86  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012917  PC1_1345  binding-protein-dependent transport systems inner membrane component  44.4 
 
 
506 aa  319  7e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_008322  Shewmr7_0607  binding-protein-dependent transport systems inner membrane component  37.33 
 
 
544 aa  319  1e-85  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3516  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
544 aa  319  1e-85  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0602  binding-protein-dependent transport systems inner membrane component  38.29 
 
 
543 aa  318  2e-85  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3816  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
543 aa  316  8e-85  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1797  binding-protein-dependent transport systems inner membrane component  40.78 
 
 
557 aa  315  9.999999999999999e-85  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.406299 
 
 
-
 
NC_009428  Rsph17025_1481  binding-protein-dependent transport systems inner membrane component  40.68 
 
 
557 aa  315  9.999999999999999e-85  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.673481  normal 
 
 
-
 
NC_007493  RSP_0163  putative iron(III) ABC transporter, fused inner membrane subunits  40.58 
 
 
557 aa  311  1e-83  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1597  binding-protein-dependent transport systems inner membrane component  36.61 
 
 
528 aa  311  2.9999999999999997e-83  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0454  binding-protein-dependent transport systems inner membrane component  40.08 
 
 
562 aa  310  4e-83  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_009665  Shew185_3692  binding-protein-dependent transport systems inner membrane component  38.29 
 
 
543 aa  310  5.9999999999999995e-83  Shewanella baltica OS185  Bacteria  normal  0.25371  n/a   
 
 
-
 
NC_007604  Synpcc7942_1407  iron(III) ABC transporter permease protein  42.05 
 
 
543 aa  310  5.9999999999999995e-83  Synechococcus elongatus PCC 7942  Bacteria  normal  0.960253  normal 
 
 
-
 
NC_009901  Spea_0845  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
543 aa  308  2.0000000000000002e-82  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0298  binding-protein-dependent transport systems inner membrane component  38.86 
 
 
589 aa  308  2.0000000000000002e-82  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0166577  normal 
 
 
-
 
NC_009654  Mmwyl1_3753  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
554 aa  306  4.0000000000000004e-82  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.104442 
 
 
-
 
NC_013161  Cyan8802_3435  binding-protein-dependent transport systems inner membrane component  38.45 
 
 
560 aa  305  1.0000000000000001e-81  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2669  binding-protein-dependent transport systems inner membrane component  38.45 
 
 
560 aa  305  1.0000000000000001e-81  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_3634  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
543 aa  305  2.0000000000000002e-81  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002575  ferric iron ABC transporter permease protein  34.93 
 
 
541 aa  303  5.000000000000001e-81  Vibrio sp. Ex25  Bacteria  normal  0.500484  n/a   
 
 
-
 
NC_009719  Plav_0177  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
553 aa  299  1e-79  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.445803 
 
 
-
 
NC_008044  TM1040_0122  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
559 aa  298  2e-79  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3223  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
555 aa  297  3e-79  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0637  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
543 aa  297  3e-79  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.744333  n/a   
 
 
-
 
NC_009783  VIBHAR_03434  hypothetical protein  33.59 
 
 
541 aa  294  3e-78  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_0667  iron(III) ABC transporter, permease protein  38.98 
 
 
542 aa  293  4e-78  Shewanella amazonensis SB2B  Bacteria  normal  0.0603449  normal 
 
 
-
 
NC_007298  Daro_1198  binding-protein dependent transport system inner membrane protein  39.17 
 
 
545 aa  293  5e-78  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0768  binding-protein dependent transport system inner membrane protein  43.2 
 
 
558 aa  291  2e-77  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3509  binding-protein-dependent transport systems inner membrane component  38.53 
 
 
574 aa  291  2e-77  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.00284173  normal  0.308977 
 
 
-
 
NC_007963  Csal_0551  binding-protein-dependent transport systems inner membrane component  39.41 
 
 
567 aa  290  5.0000000000000004e-77  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2589  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
546 aa  286  5.999999999999999e-76  Thauera sp. MZ1T  Bacteria  normal  0.677105  n/a   
 
 
-
 
NC_009092  Shew_0862  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
543 aa  280  7e-74  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1189  binding-protein-dependent transport systems inner membrane component  38.9 
 
 
549 aa  279  7e-74  Halorhodospira halophila SL1  Bacteria  normal  0.217598  n/a   
 
 
-
 
NC_008309  HS_0782  iron-uptake permease inner membrane protein  33.46 
 
 
555 aa  278  2e-73  Haemophilus somnus 129PT  Bacteria  normal  0.297135  n/a   
 
 
-
 
NC_011312  VSAL_I2587  iron(III) ABC transporter, permease protein  34.03 
 
 
543 aa  277  3e-73  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2023  putative ABC transporter permease component  38.24 
 
 
559 aa  277  4e-73  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.967123  normal  0.0816083 
 
 
-
 
NC_007802  Jann_0134  binding-protein-dependent transport systems inner membrane component  38.09 
 
 
558 aa  275  1.0000000000000001e-72  Jannaschia sp. CCS1  Bacteria  normal  0.0921183  normal 
 
 
-
 
NC_009457  VC0395_A0138  iron(III) ABC transporter, permease protein  35.47 
 
 
541 aa  274  2.0000000000000002e-72  Vibrio cholerae O395  Bacteria  hitchhiker  0.000000182315  n/a   
 
 
-
 
NC_003910  CPS_1013  iron(III) ABC transporter, permease protein  35.17 
 
 
542 aa  273  7e-72  Colwellia psychrerythraea 34H  Bacteria  normal  0.0312612  n/a   
 
 
-
 
NC_009253  Dred_1530  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
550 aa  273  9e-72  Desulfotomaculum reducens MI-1  Bacteria  normal  0.714891  n/a   
 
 
-
 
NC_008261  CPF_0441  putative iron ABC transporter, permease protein  30.9 
 
 
533 aa  270  4e-71  Clostridium perfringens ATCC 13124  Bacteria  normal  0.388151  n/a   
 
 
-
 
NC_007614  Nmul_A0731  binding-protein dependent transport system inner membrane protein  35.13 
 
 
567 aa  269  1e-70  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0677887  n/a   
 
 
-
 
NC_008340  Mlg_2575  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
568 aa  266  5.999999999999999e-70  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0287363 
 
 
-
 
NC_008709  Ping_3006  iron(III) ABC transporter, inner membrane binding component  35.04 
 
 
543 aa  266  8e-70  Psychromonas ingrahamii 37  Bacteria  normal  0.525048  normal  0.629796 
 
 
-
 
NC_013173  Dbac_0741  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
550 aa  256  9e-67  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_47290  iron ABC transporter, permease protein  40.16 
 
 
538 aa  249  1e-64  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3127  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
561 aa  249  1e-64  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0870  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
533 aa  248  3e-64  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0400876  hitchhiker  0.00000113394 
 
 
-
 
NC_008781  Pnap_0851  binding-protein-dependent transport systems inner membrane component  40.69 
 
 
540 aa  247  4e-64  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0972  ABC transporter, permease protein  30.36 
 
 
521 aa  244  3e-63  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.200041  n/a   
 
 
-
 
NC_007492  Pfl01_5429  binding-protein dependent transport system inner membrane protein  37.74 
 
 
555 aa  244  3.9999999999999997e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0325707 
 
 
-
 
NC_008782  Ajs_3565  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
552 aa  243  7.999999999999999e-63  Acidovorax sp. JS42  Bacteria  normal  0.778216  normal  0.173328 
 
 
-
 
NC_009439  Pmen_0330  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
538 aa  242  1e-62  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1507  binding-protein-dependent transport systems inner membrane component  39.84 
 
 
555 aa  242  1e-62  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.665104  normal 
 
 
-
 
NC_011992  Dtpsy_2888  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
544 aa  242  1e-62  Acidovorax ebreus TPSY  Bacteria  normal  0.553372  n/a   
 
 
-
 
NC_007948  Bpro_1149  binding-protein-dependent transport systems inner membrane component  38.52 
 
 
536 aa  237  4e-61  Polaromonas sp. JS666  Bacteria  normal  0.945562  normal 
 
 
-
 
NC_007354  Ecaj_0154  binding-protein dependent transport system inner membrane protein  29.34 
 
 
539 aa  237  5.0000000000000005e-61  Ehrlichia canis str. Jake  Bacteria  normal  0.234714  n/a   
 
 
-
 
NC_007498  Pcar_0894  ABC-type transport system, permease component  35.76 
 
 
553 aa  231  2e-59  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000205423  n/a   
 
 
-
 
NC_007404  Tbd_0989  iron transport system permease protein  35.81 
 
 
529 aa  230  6e-59  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0245  binding-protein dependent transport system inner membrane protein  37.48 
 
 
538 aa  229  8e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>