205 homologs were found in PanDaTox collection
for query gene RPB_3058 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_3058  filamentation induced by cAMP protein Fic  100 
 
 		 541 aa  1114    Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1106  filamentation induced by cAMP protein Fic  79.92 
 
 		 533 aa  903    Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_006369  lpl2288  hypothetical protein  47.51 
 
 		 502 aa  486  1e-136  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011757  Mchl_1058  filamentation induced by cAMP protein Fic  45.1 
 
 		 529 aa  486  1e-136  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.620217 
 
 
-
 
NC_009943  Dole_0828  filamentation induced by cAMP protein Fic  46.76 
 
 		 509 aa  467  9.999999999999999e-131  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_2833  filamentation induced by cAMP protein Fic  46.65 
 
 		 512 aa  463  1e-129  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_0838  filamentation induced by cAMP protein Fic  45 
 
 		 505 aa  451  1e-125  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_0191  filamentation induced by cAMP protein Fic  43.95 
 
 		 508 aa  441  9.999999999999999e-123  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_00876  filamentation induced by cAMP protein Fic  46.83 
 
 		 447 aa  427  1e-118  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_1002  filamentation induced by cAMP protein Fic  44.51 
 
 		 531 aa  423  1e-117  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_0277  filamentation induced by cAMP protein Fic  44.58 
 
 		 508 aa  423  1e-117  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000636262  n/a   
 
 
-
 
NC_008609  Ppro_0217  filamentation induced by cAMP protein Fic  43.2 
 
 		 508 aa  421  1e-116  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_011206  Lferr_2034  hypothetical protein  27.44 
 
 		 335 aa  114  6e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008942  Mlab_0909  hypothetical protein  35.33 
 
 		 328 aa  85.9  0.000000000000002  Methanocorpusculum labreanum Z  Archaea  normal  0.27357  normal  1 
 
 
-
 
NC_013385  Adeg_0799  filamentation induced by cAMP protein Fic  30.29 
 
 		 267 aa  82.8  0.00000000000001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0810  filamentation induced by cAMP protein Fic  30.29 
 
 		 267 aa  83.2  0.00000000000001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013173  Dbac_1233  filamentation induced by cAMP protein Fic  38.18 
 
 		 248 aa  79  0.0000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_0970  filamentation induced by cAMP protein Fic  35.34 
 
 		 247 aa  78.6  0.0000000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.952557  n/a   
 
 
-
 
NC_009483  Gura_2737  filamentation induced by cAMP protein Fic  32.97 
 
 		 251 aa  77  0.0000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0264056  n/a   
 
 
-
 
NC_010718  Nther_2564  filamentation induced by cAMP protein Fic  34.82 
 
 		 243 aa  74.7  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008609  Ppro_2285  filamentation induced by cAMP protein Fic  31.49 
 
 		 250 aa  72  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_2545  filamentation induced by cAMP protein Fic  33.62 
 
 		 247 aa  71.2  0.00000000004  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.992105  normal  1 
 
 
-
 
NC_008346  Swol_0160  filamentation induced by cAMP protein Fic  26.18 
 
 		 245 aa  70.9  0.00000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.132154  n/a   
 
 
-
 
NC_011898  Ccel_2696  filamentation induced by cAMP protein Fic  32.35 
 
 		 253 aa  69.3  0.0000000002  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_008751  Dvul_2613  filamentation induced by cAMP protein Fic  28.5 
 
 		 248 aa  69.3  0.0000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.427308  normal  1 
 
 
-
 
NC_010816  BLD_0340  hypothetical protein  29.17 
 
 		 240 aa  68.6  0.0000000003  Bifidobacterium longum DJO10A  Bacteria  normal  0.0522117  n/a   
 
 
-
 
NC_011666  Msil_1166  filamentation induced by cAMP protein Fic  36.26 
 
 		 252 aa  67.4  0.0000000006  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0608775 
 
 
-
 
NC_002967  TDE2745  fic family protein  35.51 
 
 		 271 aa  66.2  0.000000001  Treponema denticola ATCC 35405  Bacteria  normal  0.413938  n/a   
 
 
-
 
NC_009727  CBUD_1335  Fic family protein  38.89 
 
 		 252 aa  66.2  0.000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.324562  n/a   
 
 
-
 
NC_013595  Sros_0601  hypothetical protein  25.42 
 
 		 321 aa  65.9  0.000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2094  filamentation induced by cAMP protein Fic  31.9 
 
 		 251 aa  64.7  0.000000004  Burkholderia sp. 383  Bacteria  normal  0.437335  normal  1 
 
 
-
 
NC_008530  LGAS_1049  Fic family protein  34.31 
 
 		 271 aa  64.3  0.000000005  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000030649  normal  1 
 
 
-
 
NC_011663  Sbal223_3472  filamentation induced by cAMP protein Fic  26.73 
 
 		 333 aa  62.4  0.00000002  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_1955  filamentation induced by cAMP protein Fic  27.11 
 
 		 333 aa  62  0.00000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.484154  n/a   
 
 
-
 
NC_013204  Elen_0755  filamentation induced by cAMP protein Fic  33.67 
 
 		 226 aa  61.2  0.00000004  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  0.973476 
 
 
-
 
NC_010814  Glov_2836  filamentation induced by cAMP protein Fic  29.91 
 
 		 250 aa  61.2  0.00000005  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013512  Sdel_0460  filamentation induced by cAMP protein Fic  33.64 
 
 		 388 aa  60.8  0.00000005  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_0817  filamentation induced by cAMP protein Fic  46.38 
 
 		 256 aa  60.5  0.00000008  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2669  Fic family protein  25.37 
 
 		 330 aa  60.5  0.00000008  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013441  Gbro_3428  filamentation induced by cAMP protein Fic  33.64 
 
 		 421 aa  60.5  0.00000008  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_1397  filamentation induced by cAMP protein Fic  31.86 
 
 		 316 aa  59.7  0.0000001  Eggerthella lenta DSM 2243  Bacteria  normal  0.93843  normal  1 
 
 
-
 
NC_007519  Dde_2915  hypothetical protein  37.84 
 
 		 253 aa  58.9  0.0000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_009379  Pnuc_1123  filamentation induced by cAMP protein Fic  37.66 
 
 		 499 aa  58.5  0.0000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0705826  n/a   
 
 
-
 
NC_009943  Dole_0416  filamentation induced by cAMP protein Fic  26.37 
 
 		 336 aa  58.2  0.0000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007955  Mbur_1635  filamentation induced by cAMP protein Fic  31.37 
 
 		 326 aa  58.2  0.0000004  Methanococcoides burtonii DSM 6242  Archaea  normal  1  n/a   
 
 
-
 
NC_007519  Dde_2494  hypothetical protein  31.37 
 
 		 342 aa  57.8  0.0000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3843  filamentation induced by cAMP protein Fic  34.95 
 
 		 368 aa  57.4  0.0000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_3441  hypothetical protein  37.84 
 
 		 253 aa  57  0.0000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_1856  Fis family transcriptional regulator  38.96 
 
 		 328 aa  56.6  0.000001  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_013170  Ccur_03140  hypothetical protein  31.07 
 
 		 331 aa  56.6  0.000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.148194  hitchhiker  0.000000000000117198 
 
 
-
 
NC_009832  Spro_0565  filamentation induced by cAMP protein Fic  32.94 
 
 		 358 aa  55.1  0.000003  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0018431  normal  1 
 
 
-
 
NC_010725  Mpop_4097  filamentation induced by cAMP protein Fic  32.14 
 
 		 544 aa  55.1  0.000003  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013521  Sked_33230  hypothetical protein  29.92 
 
 		 408 aa  55.1  0.000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_3625  filamentation induced by cAMP protein Fic  36 
 
 		 371 aa  54.7  0.000004  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_013169  Ksed_22590  hypothetical protein  37.21 
 
 		 429 aa  54.7  0.000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_0509  filamentation induced by cAMP protein Fic  32.43 
 
 		 387 aa  54.3  0.000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_3863  filamentation induced by cAMP protein Fic  36.36 
 
 		 334 aa  53.9  0.000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.0343511 
 
 
-
 
NC_013411  GYMC61_1541  filamentation induced by cAMP protein Fic  31.15 
 
 		 364 aa  53.9  0.000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010117  COXBURSA331_A2207  hypothetical protein  26.56 
 
 		 348 aa  53.9  0.000007  Coxiella burnetii RSA 331  Bacteria  hitchhiker  0.00000284697  n/a   
 
 
-
 
NC_009727  CBUD_2174  Fic family protein  26.56 
 
 		 348 aa  53.9  0.000007  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_1818  filamentation induced by cAMP protein Fic  32.23 
 
 		 345 aa  53.9  0.000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.702991  normal  1 
 
 
-
 
NC_004347  SO_0367  hypothetical protein  34.34 
 
 		 371 aa  53.5  0.000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013730  Slin_3797  filamentation induced by cAMP protein Fic  27.89 
 
 		 371 aa  53.1  0.00001  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.117208 
 
 
-
 
NC_013739  Cwoe_2374  filamentation induced by cAMP protein Fic  37.04 
 
 		 392 aa  53.1  0.00001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0692926  normal  0.0752567 
 
 
-
 
NC_009665  Shew185_0359  filamentation induced by cAMP protein Fic  35.16 
 
 		 375 aa  53.1  0.00001  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0607  filamentation induced by cAMP protein Fic  29.32 
 
 		 412 aa  53.1  0.00001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002967  TDE2641  Fic family protein  29.9 
 
 		 328 aa  52.4  0.00002  Treponema denticola ATCC 35405  Bacteria  unclonable  0.000000103829  n/a   
 
 
-
 
NC_007514  Cag_0182  Fic family protein  25.86 
 
 		 352 aa  52.8  0.00002  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_014148  Plim_3926  filamentation induced by cAMP protein Fic  31.63 
 
 		 500 aa  52.8  0.00002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.118695  n/a   
 
 
-
 
NC_011663  Sbal223_0369  filamentation induced by cAMP protein Fic  34.34 
 
 		 371 aa  52.8  0.00002  Shewanella baltica OS223  Bacteria  normal  1  hitchhiker  0.0000333205 
 
 
-
 
NC_013530  Xcel_0777  filamentation induced by cAMP protein Fic  30.85 
 
 		 356 aa  52.8  0.00002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.4104  n/a   
 
 
-
 
NC_009997  Sbal195_0366  filamentation induced by cAMP protein Fic  33.67 
 
 		 375 aa  52.8  0.00002  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_0336  filamentation induced by cAMP protein Fic  33.67 
 
 		 371 aa  52.8  0.00002  Shewanella sp. MR-7  Bacteria  normal  0.134655  normal  0.368234 
 
 
-
 
NC_008577  Shewana3_3804  filamentation induced by cAMP protein Fic  33.67 
 
 		 371 aa  52.4  0.00002  Shewanella sp. ANA-3  Bacteria  normal  0.539894  normal  1 
 
 
-
 
NC_009052  Sbal_0361  filamentation induced by cAMP protein Fic  34.34 
 
 		 371 aa  52.8  0.00002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011883  Ddes_2357  filamentation induced by cAMP protein Fic  33.87 
 
 		 371 aa  51.6  0.00003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_2726  filamentation induced by cAMP protein Fic  40.54 
 
 		 395 aa  52  0.00003  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008347  Mmar10_2315  filamentation induced by cAMP protein Fic  35.14 
 
 		 376 aa  51.6  0.00003  Maricaulis maris MCS10  Bacteria  normal  0.655269  normal  1 
 
 
-
 
NC_008463  PA14_28800  hypothetical protein  24.38 
 
 		 331 aa  52  0.00003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000000000287413  decreased coverage  0.000000000406133 
 
 
-
 
NC_011830  Dhaf_0086  filamentation induced by cAMP protein Fic  33.33 
 
 		 304 aa  51.6  0.00003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_0154  filamentation induced by cAMP protein Fic  30.97 
 
 		 393 aa  52  0.00003  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  0.0242065 
 
 
-
 
NC_009524  PsycPRwf_0723  filamentation induced by cAMP protein Fic  28.67 
 
 		 373 aa  52  0.00003  Psychrobacter sp. PRwf-1  Bacteria  normal  0.43274  hitchhiker  0.00000454462 
 
 
-
 
NC_013730  Slin_4575  filamentation induced by cAMP protein Fic  27.89 
 
 		 377 aa  51.6  0.00004  Spirosoma linguale DSM 74  Bacteria  normal  0.76172  normal  1 
 
 
-
 
NC_009483  Gura_3069  filamentation induced by cAMP protein Fic  32.35 
 
 		 309 aa  51.2  0.00004  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_0716  filamentation induced by cAMP protein Fic  40 
 
 		 498 aa  51.6  0.00004  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  hitchhiker  0.000120518 
 
 
-
 
NC_010505  Mrad2831_2527  filamentation induced by cAMP protein Fic  30.71 
 
 		 412 aa  51.2  0.00005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_4924  filamentation induced by cAMP protein Fic  34.52 
 
 		 369 aa  51.2  0.00005  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000928256 
 
 
-
 
NC_008639  Cpha266_0640  filamentation induced by cAMP protein Fic  38.46 
 
 		 501 aa  50.8  0.00006  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_07450  hypothetical protein  35.56 
 
 		 373 aa  50.4  0.00007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000039973  normal  0.18978 
 
 
-
 
NC_011060  Ppha_2616  death-on-curing family protein  36.23 
 
 		 261 aa  50.4  0.00007  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_4148  filamentation induced by cAMP protein Fic  31.18 
 
 		 359 aa  50.8  0.00007  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_0677  hypothetical protein  35.56 
 
 		 373 aa  50.4  0.00007  Pseudomonas aeruginosa PA7  Bacteria  decreased coverage  0.00227082  n/a   
 
 
-
 
NC_002939  GSU2183  fic family protein  37.68 
 
 		 491 aa  50.4  0.00008  Geobacter sulfurreducens PCA  Bacteria  normal  0.723486  n/a   
 
 
-
 
NC_010571  Oter_0995  filamentation induced by cAMP protein Fic  34.78 
 
 		 386 aa  50.4  0.00008  Opitutus terrae PB90-1  Bacteria  normal  0.0390266  hitchhiker  0.00286673 
 
 
-
 
NC_007777  Francci3_0673  filamentation induced by cAMP protein Fic  35.87 
 
 		 398 aa  50.1  0.00009  Frankia sp. CcI3  Bacteria  normal  0.974543  normal  0.0892383 
 
 
-
 
NC_009483  Gura_0597  filamentation induced by cAMP protein Fic  36.96 
 
 		 512 aa  50.4  0.00009  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_3067  filamentation induced by cAMP protein Fic  32.35 
 
 		 374 aa  50.1  0.00009  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_0711  filamentation induced by cAMP protein Fic  34.18 
 
 		 380 aa  49.7  0.0001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_3619  filamentation induced by cAMP protein Fic  34.02 
 
 		 376 aa  50.1  0.0001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_3428  filamentation induced by cAMP protein Fic  29.57 
 
 		 380 aa  50.1  0.0001  Dickeya dadantii Ech703  Bacteria  normal  0.469085  n/a   
 
 
-
 
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