More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1955 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011663  Sbal223_3472  filamentation induced by cAMP protein Fic  98.2 
 
 		 333 aa  672    Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_1955  filamentation induced by cAMP protein Fic  100 
 
 		 333 aa  682    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.484154  n/a   
 
 
-
 
NC_002967  TDE2641  Fic family protein  49.4 
 
 		 328 aa  337  1.9999999999999998e-91  Treponema denticola ATCC 35405  Bacteria  unclonable  0.000000103829  n/a   
 
 
-
 
NC_008609  Ppro_1856  Fis family transcriptional regulator  49.7 
 
 		 328 aa  321  9.999999999999999e-87  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_013170  Ccur_03140  hypothetical protein  47.02 
 
 		 331 aa  320  1.9999999999999998e-86  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.148194  hitchhiker  0.000000000000117198 
 
 
-
 
NC_007519  Dde_2494  hypothetical protein  53.17 
 
 		 342 aa  294  2e-78  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_28800  hypothetical protein  53.6 
 
 		 331 aa  290  3e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000000000287413  decreased coverage  0.000000000406133 
 
 
-
 
NC_009943  Dole_0416  filamentation induced by cAMP protein Fic  50.34 
 
 		 336 aa  288  1e-76  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_1397  filamentation induced by cAMP protein Fic  43.33 
 
 		 316 aa  282  7.000000000000001e-75  Eggerthella lenta DSM 2243  Bacteria  normal  0.93843  normal  1 
 
 
-
 
NC_009457  VC0395_A2669  Fic family protein  51.39 
 
 		 330 aa  280  3e-74  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_0182  Fic family protein  43.11 
 
 		 352 aa  274  1.0000000000000001e-72  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3863  filamentation induced by cAMP protein Fic  50.33 
 
 		 334 aa  271  1e-71  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.0343511 
 
 
-
 
NC_013739  Cwoe_5696  filamentation induced by cAMP protein Fic  28.24 
 
 		 358 aa  100  3e-20  Conexibacter woesei DSM 14684  Bacteria  decreased coverage  0.00196433  normal  1 
 
 
-
 
NC_009253  Dred_0937  filamentation induced by cAMP protein Fic  25.69 
 
 		 368 aa  97.1  4e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008942  Mlab_0909  hypothetical protein  28.02 
 
 		 328 aa  93.2  5e-18  Methanocorpusculum labreanum Z  Archaea  normal  0.27357  normal  1 
 
 
-
 
NC_009253  Dred_0817  filamentation induced by cAMP protein Fic  33.33 
 
 		 256 aa  88.2  2e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_0154  filamentation induced by cAMP protein Fic  28.62 
 
 		 393 aa  84.3  0.000000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  0.0242065 
 
 
-
 
NC_007498  Pcar_1812  hypothetical protein  50.57 
 
 		 224 aa  83.6  0.000000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0168  Fic family protein  30.56 
 
 		 388 aa  81.6  0.00000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_002978  WD0365  Fic family protein  26.55 
 
 		 348 aa  81.3  0.00000000000002  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_1335  Fic family protein  31.73 
 
 		 252 aa  80.9  0.00000000000003  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.324562  n/a   
 
 
-
 
NC_011060  Ppha_1972  filamentation induced by cAMP protein Fic  27.48 
 
 		 349 aa  80.9  0.00000000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.335925  n/a   
 
 
-
 
NC_013216  Dtox_4190  filamentation induced by cAMP protein Fic  25.87 
 
 		 367 aa  80.5  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A0010  hypothetical protein  28.23 
 
 		 383 aa  80.1  0.00000000000005  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_4508  filamentation induced by cAMP protein Fic  31.4 
 
 		 317 aa  79.3  0.00000000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2564  filamentation induced by cAMP protein Fic  30.32 
 
 		 243 aa  78.6  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013172  Bfae_05510  hypothetical protein  27.23 
 
 		 394 aa  77.4  0.0000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_1798  filamentation induced by cAMP protein Fic  36.3 
 
 		 427 aa  77.4  0.0000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  hitchhiker  0.000000635308  n/a   
 
 
-
 
NC_010571  Oter_0995  filamentation induced by cAMP protein Fic  32.91 
 
 		 386 aa  76.3  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.0390266  hitchhiker  0.00286673 
 
 
-
 
NC_008347  Mmar10_2315  filamentation induced by cAMP protein Fic  31.21 
 
 		 376 aa  76.6  0.0000000000006  Maricaulis maris MCS10  Bacteria  normal  0.655269  normal  1 
 
 
-
 
NC_008751  Dvul_2613  filamentation induced by cAMP protein Fic  29.73 
 
 		 248 aa  76.3  0.0000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  0.427308  normal  1 
 
 
-
 
NC_008609  Ppro_0096  filamentation induced by cAMP protein Fic  27.17 
 
 		 349 aa  76.3  0.0000000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2737  filamentation induced by cAMP protein Fic  27.35 
 
 		 251 aa  76.3  0.0000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  0.0264056  n/a   
 
 
-
 
NC_002978  WD1314  Fic family protein  29.33 
 
 		 359 aa  75.9  0.000000000001  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  0.148349  n/a   
 
 
-
 
NC_011060  Ppha_0970  filamentation induced by cAMP protein Fic  28.99 
 
 		 247 aa  75.1  0.000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.952557  n/a   
 
 
-
 
NC_013730  Slin_2152  filamentation induced by cAMP protein Fic  32.89 
 
 		 374 aa  74.7  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.164511  normal  0.297035 
 
 
-
 
NC_013173  Dbac_2308  filamentation induced by cAMP protein Fic  26.84 
 
 		 349 aa  75.1  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_2726  filamentation induced by cAMP protein Fic  26.64 
 
 		 395 aa  74.3  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011662  Tmz1t_0471  filamentation induced by cAMP protein Fic  27.57 
 
 		 393 aa  74.3  0.000000000003  Thauera sp. MZ1T  Bacteria  normal  0.586751  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2207  hypothetical protein  27.86 
 
 		 348 aa  73.9  0.000000000003  Coxiella burnetii RSA 331  Bacteria  hitchhiker  0.00000284697  n/a   
 
 
-
 
NC_009523  RoseRS_0276  filamentation induced by cAMP protein Fic  37.06 
 
 		 387 aa  74.3  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.475066  unclonable  0.0000132219 
 
 
-
 
NC_009727  CBUD_2174  Fic family protein  27.86 
 
 		 348 aa  73.9  0.000000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_007955  Mbur_1635  filamentation induced by cAMP protein Fic  26.63 
 
 		 326 aa  73.9  0.000000000004  Methanococcoides burtonii DSM 6242  Archaea  normal  1  n/a   
 
 
-
 
NC_013061  Phep_0903  filamentation induced by cAMP protein Fic  27.82 
 
 		 347 aa  72.8  0.000000000009  Pedobacter heparinus DSM 2366  Bacteria  normal  1  hitchhiker  0.000226959 
 
 
-
 
NC_009714  CHAB381_1403  MloA  33.33 
 
 		 359 aa  72.4  0.000000000009  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.10524  n/a   
 
 
-
 
NC_009483  Gura_1281  filamentation induced by cAMP protein Fic  29.64 
 
 		 349 aa  72.4  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_3993  filamentation induced by cAMP protein Fic  28.86 
 
 		 353 aa  72.4  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  0.284344 
 
 
-
 
NC_007777  Francci3_0673  filamentation induced by cAMP protein Fic  26.27 
 
 		 398 aa  71.2  0.00000000002  Frankia sp. CcI3  Bacteria  normal  0.974543  normal  0.0892383 
 
 
-
 
NC_011832  Mpal_1350  filamentation induced by cAMP protein Fic  30.58 
 
 		 443 aa  71.6  0.00000000002  Methanosphaerula palustris E1-9c  Archaea  normal  1  normal  0.470357 
 
 
-
 
NC_007954  Sden_0294  filamentation induced by cAMP protein Fic  29.86 
 
 		 359 aa  71.6  0.00000000002  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_3247  hypothetical protein  29.86 
 
 		 377 aa  71.6  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.199811  normal  0.982755 
 
 
-
 
NC_013037  Dfer_5385  filamentation induced by cAMP protein Fic  26.89 
 
 		 370 aa  71.2  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_2057  filamentation induced by cAMP protein Fic  33.02 
 
 		 377 aa  71.2  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.280737  normal  1 
 
 
-
 
NC_010816  BLD_1551  hypothetical protein  26.13 
 
 		 314 aa  71.6  0.00000000002  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_2249  filamentation induced by cAMP protein Fic  30.73 
 
 		 389 aa  70.9  0.00000000003  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_0300  filamentation induced by cAMP protein Fic  28.9 
 
 		 398 aa  70.5  0.00000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.372367  normal  1 
 
 
-
 
NC_007575  Suden_0227  filamentation induced by cAMP protein Fic  33.79 
 
 		 376 aa  70.5  0.00000000004  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.0000000424748  n/a   
 
 
-
 
NC_013441  Gbro_3428  filamentation induced by cAMP protein Fic  31.74 
 
 		 421 aa  70.5  0.00000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_1541  filamentation induced by cAMP protein Fic  24.05 
 
 		 364 aa  70.5  0.00000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0799  filamentation induced by cAMP protein Fic  25.6 
 
 		 267 aa  70.5  0.00000000004  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0810  filamentation induced by cAMP protein Fic  24.19 
 
 		 267 aa  70.5  0.00000000004  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008687  Pden_3305  filamentation induced by cAMP protein Fic  26.36 
 
 		 393 aa  70.1  0.00000000004  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.735842 
 
 
-
 
NC_013512  Sdel_2002  filamentation induced by cAMP protein Fic  33.33 
 
 		 375 aa  70.1  0.00000000005  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.733317  n/a   
 
 
-
 
NC_013721  HMPREF0424_0152  Fic family protein  33.57 
 
 		 416 aa  70.1  0.00000000005  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.19734 
 
 
-
 
NC_013174  Jden_0044  filamentation induced by cAMP protein Fic  33.79 
 
 		 419 aa  69.7  0.00000000006  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  0.203132 
 
 
-
 
NC_010831  Cphamn1_2545  filamentation induced by cAMP protein Fic  32.52 
 
 		 247 aa  70.1  0.00000000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.992105  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0190  filamentation induced by cAMP protein Fic  26.69 
 
 		 384 aa  69.7  0.00000000007  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_4167  filamentation induced by cAMP protein Fic  25.77 
 
 		 351 aa  69.7  0.00000000007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.120401  normal  1 
 
 
-
 
NC_011071  Smal_3268  filamentation induced by cAMP protein Fic  34.13 
 
 		 381 aa  69.3  0.00000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.592904  normal  1 
 
 
-
 
NC_009051  Memar_2116  filamentation induced by cAMP protein Fic  25.36 
 
 		 426 aa  69.3  0.00000000009  Methanoculleus marisnigri JR1  Archaea  normal  1  n/a   
 
 
-
 
NC_013521  Sked_33230  hypothetical protein  26.7 
 
 		 408 aa  68.6  0.0000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007514  Cag_0831  AsnC family regulatory protein  27.27 
 
 		 349 aa  68.9  0.0000000001  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.00000000889639  n/a   
 
 
-
 
NC_013202  Hmuk_2006  filamentation induced by cAMP protein Fic  24.89 
 
 		 401 aa  68.9  0.0000000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  0.0414865 
 
 
-
 
NC_008346  Swol_0160  filamentation induced by cAMP protein Fic  30.51 
 
 		 245 aa  68.6  0.0000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.132154  n/a   
 
 
-
 
NC_013173  Dbac_1233  filamentation induced by cAMP protein Fic  27.52 
 
 		 248 aa  68.9  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_2962  filamentation induced by cAMP protein Fic  34.56 
 
 		 375 aa  68.6  0.0000000001  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_0593  filamentation induced by cAMP protein Fic  27.47 
 
 		 412 aa  68.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_3241  filamentation induced by cAMP protein Fic  47.37 
 
 		 175 aa  68.6  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_010816  BLD_0340  hypothetical protein  26.67 
 
 		 240 aa  68.2  0.0000000002  Bifidobacterium longum DJO10A  Bacteria  normal  0.0522117  n/a   
 
 
-
 
NC_009338  Mflv_0293  filamentation induced by cAMP protein Fic  27.78 
 
 		 394 aa  68.2  0.0000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.970284  decreased coverage  0.0093527 
 
 
-
 
NC_009051  Memar_1471  filamentation induced by cAMP protein Fic  24.9 
 
 		 369 aa  68.2  0.0000000002  Methanoculleus marisnigri JR1  Archaea  normal  1  n/a   
 
 
-
 
NC_013204  Elen_3019  filamentation induced by cAMP protein Fic  25.79 
 
 		 403 aa  67.8  0.0000000002  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_4266  hypothetical protein  37.19 
 
 		 372 aa  67.4  0.0000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007406  Nwi_2109  filamentation induced by cAMP protein Fic  31.94 
 
 		 391 aa  67.4  0.0000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013158  Huta_2627  filamentation induced by cAMP protein Fic  28.07 
 
 		 384 aa  67.4  0.0000000003  Halorhabdus utahensis DSM 12940  Archaea  normal  0.828217  n/a   
 
 
-
 
NC_011830  Dhaf_0086  filamentation induced by cAMP protein Fic  27.54 
 
 		 304 aa  67.4  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_0315  filamentation induced by cAMP protein Fic  29.72 
 
 		 398 aa  67.4  0.0000000003  Polaromonas sp. JS666  Bacteria  normal  0.300424  normal  1 
 
 
-
 
NC_009943  Dole_0828  filamentation induced by cAMP protein Fic  30.92 
 
 		 509 aa  67  0.0000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B2094  filamentation induced by cAMP protein Fic  30.73 
 
 		 251 aa  66.6  0.0000000005  Burkholderia sp. 383  Bacteria  normal  0.437335  normal  1 
 
 
-
 
NC_013730  Slin_3797  filamentation induced by cAMP protein Fic  33.33 
 
 		 371 aa  67  0.0000000005  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.117208 
 
 
-
 
NC_008609  Ppro_2285  filamentation induced by cAMP protein Fic  28.7 
 
 		 250 aa  67  0.0000000005  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_009051  Memar_2264  filamentation induced by cAMP protein Fic  27.27 
 
 		 384 aa  66.6  0.0000000006  Methanoculleus marisnigri JR1  Archaea  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0617  filamentation induced by cAMP protein Fic  26.79 
 
 		 393 aa  66.2  0.0000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_006369  lpl2288  hypothetical protein  34.58 
 
 		 502 aa  66.2  0.0000000008  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_3924  filamentation induced by cAMP protein Fic  26.9 
 
 		 391 aa  65.9  0.0000000008  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_4148  filamentation induced by cAMP protein Fic  33.33 
 
 		 359 aa  66.2  0.0000000008  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_2003  fic family protein  30.48 
 
 		 377 aa  65.9  0.0000000009  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.0278833  n/a   
 
 
-
 
NC_009621  Smed_6016  filamentation induced by cAMP protein Fic  28.05 
 
 		 343 aa  65.9  0.0000000009  Sinorhizobium medicae WSM419  Bacteria  normal  1  hitchhiker  0.00688605 
 
 
-
 
NC_010717  PXO_03956  Fic protein family  30.95 
 
 		 342 aa  65.5  0.000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007955  Mbur_1221  filamentation induced by cAMP protein Fic  30.71 
 
 		 358 aa  65.9  0.000000001  Methanococcoides burtonii DSM 6242  Archaea  normal  1  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>