More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4290 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_4290  glucose-1-phosphate thymidylyltransferase  100 
 
 
290 aa  595  1e-169  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.314543 
 
 
-
 
NC_007492  Pfl01_4056  glucose-1-phosphate thymidylyltransferase  78.87 
 
 
296 aa  466  9.999999999999999e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.340468 
 
 
-
 
NC_011662  Tmz1t_3810  glucose-1-phosphate thymidylyltransferase  77.78 
 
 
292 aa  462  1e-129  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3933  glucose-1-phosphate thymidylyltransferase  77.82 
 
 
296 aa  461  1e-129  Pseudomonas putida F1  Bacteria  normal  0.527502  normal  0.192647 
 
 
-
 
NC_004578  PSPTO_1079  glucose-1-phosphate thymidylyltransferase  77.11 
 
 
296 aa  458  9.999999999999999e-129  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.857116  n/a   
 
 
-
 
NC_007969  Pcryo_0625  glucose-1-phosphate thymidylyltransferase  77.08 
 
 
290 aa  459  9.999999999999999e-129  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.150141 
 
 
-
 
NC_007204  Psyc_1214  glucose-1-phosphate thymidylyltransferase  75.96 
 
 
296 aa  457  1e-127  Psychrobacter arcticus 273-4  Bacteria  normal  0.942362  decreased coverage  0.00289209 
 
 
-
 
NC_009654  Mmwyl1_0838  glucose-1-phosphate thymidylyltransferase  75.17 
 
 
293 aa  450  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  0.22071  normal 
 
 
-
 
NC_007492  Pfl01_0702  glucose-1-phosphate thymidylyltransferase  73.01 
 
 
307 aa  450  1e-125  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00504967  normal 
 
 
-
 
NC_004116  SAG1200  glucose-1-phosphate thymidylyltransferase  73.01 
 
 
289 aa  439  9.999999999999999e-123  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1786  glucose-1-phosphate thymidylyltransferase  71.53 
 
 
292 aa  437  9.999999999999999e-123  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2131  glucose-1-phosphate thymidylyltransferase  72.63 
 
 
297 aa  437  9.999999999999999e-123  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1798  glucose-1-phosphate thymidylyltransferase  72.82 
 
 
287 aa  436  1e-121  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_2130  glucose-1-phosphate thymidylyltransferase  71.63 
 
 
293 aa  434  1e-121  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2539  glucose-1-phosphate thymidylyltransferase  72.03 
 
 
289 aa  427  1e-119  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0517  glucose-1-phosphate thymidylyltransferase  72.63 
 
 
293 aa  429  1e-119  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_4028  glucose-1-phosphate thymidylyltransferase  72.63 
 
 
310 aa  430  1e-119  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0187  glucose-1-phosphate thymidylyltransferase  72.63 
 
 
293 aa  429  1e-119  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0166  glucose-1-phosphate thymidylyltransferase  72.98 
 
 
293 aa  427  1e-119  Serratia proteamaculans 568  Bacteria  normal  0.455037  normal 
 
 
-
 
CP001509  ECD_03667  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4187  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2858  glucose-1-phosphate thymidylyltransferase  71.58 
 
 
289 aa  427  1e-118  Dickeya zeae Ech1591  Bacteria  normal  0.0450568  n/a   
 
 
-
 
NC_010498  EcSMS35_4153  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_4214  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001807  glucose-1-phosphate thymidylyltransferase  71.93 
 
 
293 aa  425  1e-118  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4134  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.886764  normal 
 
 
-
 
NC_010658  SbBS512_E4132  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2889  glucose-1-phosphate thymidylyltransferase  72.98 
 
 
286 aa  427  1e-118  Shewanella baltica OS155  Bacteria  normal  0.4055  n/a   
 
 
-
 
NC_012892  B21_03616  hypothetical protein  72.28 
 
 
293 aa  425  1e-118  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1402  glucose-1-phosphate thymidylyltransferase  70.24 
 
 
291 aa  426  1e-118  Shewanella loihica PV-4  Bacteria  normal  decreased coverage  0.00196644 
 
 
-
 
NC_009801  EcE24377A_4300  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli E24377A  Bacteria  normal  0.671584  n/a   
 
 
-
 
NC_008532  STER_1224  glucose-1-phosphate thymidyl transferase  70.59 
 
 
289 aa  425  1e-118  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4006  glucose-1-phosphate thymidylyltransferase  72.28 
 
 
293 aa  425  1e-118  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I3019  glucose-1-phosphate thymidyl transferase  69.2 
 
 
295 aa  425  1e-118  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.313086  n/a   
 
 
-
 
NC_004347  SO_3186  glucose-1-phosphate-thymidylyltransferase  70.28 
 
 
304 aa  421  1e-117  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011353  ECH74115_5222  glucose-1-phosphate thymidylyltransferase  71.93 
 
 
293 aa  422  1e-117  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.350144  normal 
 
 
-
 
NC_009800  EcHS_A2181  glucose-1-phosphate thymidylyltransferase  70.49 
 
 
289 aa  423  1e-117  Escherichia coli HS  Bacteria  normal  0.112189  n/a   
 
 
-
 
NC_009656  PSPA7_5902  glucose-1-phosphate thymidylyltransferase  70.93 
 
 
293 aa  422  1e-117  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1319  glucose-1-phosphate thymidylyltransferase  69.66 
 
 
291 aa  421  1e-117  Shewanella sp. MR-4  Bacteria  normal  normal  0.0322301 
 
 
-
 
NC_008463  PA14_68200  glucose-1-phosphate thymidylyltransferase  70.59 
 
 
293 aa  422  1e-117  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0399407 
 
 
-
 
NC_009665  Shew185_2899  glucose-1-phosphate thymidylyltransferase  71.78 
 
 
287 aa  421  1e-117  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_3075  glucose-1-phosphate thymidylyltransferase  69.23 
 
 
293 aa  419  1e-116  Methanospirillum hungatei JF-1  Archaea  normal  0.589168  normal  0.11788 
 
 
-
 
NC_012880  Dd703_3286  glucose-1-phosphate thymidylyltransferase  68.75 
 
 
288 aa  419  1e-116  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2319  glucose-1-phosphate thymidylyltransferase  69.2 
 
 
293 aa  417  1e-116  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.103885 
 
 
-
 
NC_008527  LACR_0200  glucose-1-phosphate thymidylyltransferase  69.82 
 
 
289 aa  418  1e-116  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.310491  n/a   
 
 
-
 
NC_008700  Sama_2240  glucose-1-phosphate thymidylyltransferase  70.07 
 
 
305 aa  420  1e-116  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.572666 
 
 
-
 
CP001637  EcDH1_1618  glucose-1-phosphate thymidylyltransferase  68.06 
 
 
293 aa  416  9.999999999999999e-116  Escherichia coli DH1  Bacteria  normal  0.0952229  n/a   
 
 
-
 
NC_003295  RSc0684  glucose-1-phosphate thymidylyltransferase protein  68.86 
 
 
292 aa  414  9.999999999999999e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1194  glucose-1-phosphate thymidylyltransferase  68.18 
 
 
292 aa  415  9.999999999999999e-116  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3029  glucose-1-phosphate thymidylyltransferase  69.12 
 
 
291 aa  416  9.999999999999999e-116  Shewanella baltica OS195  Bacteria  normal  normal  0.173381 
 
 
-
 
NC_011992  Dtpsy_0555  glucose-1-phosphate thymidylyltransferase  67.82 
 
 
296 aa  414  9.999999999999999e-116  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2662  glucose-1-phosphate thymidylyltransferase  70.03 
 
 
289 aa  416  9.999999999999999e-116  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_0208  glucose-1-phosphate thymidylyltransferase  68.29 
 
 
287 aa  417  9.999999999999999e-116  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2829  glucose-1-phosphate thymidylyltransferase  69.9 
 
 
289 aa  417  9.999999999999999e-116  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0574416  n/a   
 
 
-
 
NC_010322  PputGB1_1382  glucose-1-phosphate thymidylyltransferase  69.01 
 
 
293 aa  416  9.999999999999999e-116  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000585484 
 
 
-
 
NC_008554  Sfum_2263  glucose-1-phosphate thymidylyltransferase  68.99 
 
 
305 aa  416  9.999999999999999e-116  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1380  glucose-1-phosphate thymidylyltransferase  70.18 
 
 
286 aa  416  9.999999999999999e-116  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_013421  Pecwa_3016  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
289 aa  416  9.999999999999999e-116  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00414881  n/a   
 
 
-
 
CP001509  ECD_01945  glucose-1-phosphate thymidylyltransferase  67.96 
 
 
292 aa  411  1e-114  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1238  glucose-1-phosphate thymidylyltransferase  67.82 
 
 
296 aa  413  1e-114  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.981269 
 
 
-
 
NC_011312  VSAL_I0179  glucose-1-phosphate thymidylyltransferase RmlA  68.17 
 
 
294 aa  414  1e-114  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1277  glucose-1-phosphate thymidylyltransferase  66.78 
 
 
296 aa  412  1e-114  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0843  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
297 aa  412  1e-114  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0237145 
 
 
-
 
NC_007651  BTH_I1470  glucose-1-phosphate thymidylyltransferase  69.01 
 
 
312 aa  413  1e-114  Burkholderia thailandensis E264  Bacteria  normal  0.759037  n/a   
 
 
-
 
NC_007912  Sde_2130  glucose-1-phosphate thymidylyltransferase  68.06 
 
 
288 aa  412  1e-114  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0244  glucose-1-phosphate thymidylyltransferase RmlA  68.17 
 
 
294 aa  414  1e-114  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1299  glucose-1-phosphate thymidylyltransferase  69.44 
 
 
291 aa  412  1e-114  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0390  glucose-1-phosphate thymidylyltransferase  69.04 
 
 
297 aa  412  1e-114  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0639  glucose-1-phosphate thymidylyltransferase  68.17 
 
 
294 aa  411  1e-114  Ralstonia pickettii 12J  Bacteria  normal  normal  0.477683 
 
 
-
 
NC_011830  Dhaf_4472  glucose-1-phosphate thymidylyltransferase  67.94 
 
 
292 aa  412  1e-114  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0455332  n/a   
 
 
-
 
NC_009901  Spea_1399  glucose-1-phosphate thymidylyltransferase  66.9 
 
 
290 aa  413  1e-114  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0872  glucose-1-phosphate thymidylyltransferase  69.04 
 
 
297 aa  411  1e-114  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3038  glucose-1-phosphate thymidylyltransferase  67.83 
 
 
292 aa  412  1e-114  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3464  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
293 aa  412  1e-114  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.349025 
 
 
-
 
NC_012560  Avin_15940  glucose-1-phosphate thymidylyltransferase  68.17 
 
 
293 aa  410  1e-113  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_03410  Glucose-1-phosphate thymidylyltransferase  67.13 
 
 
293 aa  409  1e-113  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0401967  normal 
 
 
-
 
NC_009076  BURPS1106A_3140  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
297 aa  407  1e-113  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3103  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
297 aa  407  1e-113  Burkholderia pseudomallei 668  Bacteria  normal  0.0791129  n/a   
 
 
-
 
NC_007434  BURPS1710b_3162  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
312 aa  408  1e-113  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1011  glucose-1-phosphate thymidylyltransferase  68.79 
 
 
292 aa  407  1e-113  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2330  glucose-1-phosphate thymidylyltransferase  67.61 
 
 
292 aa  408  1e-113  Escherichia coli E24377A  Bacteria  normal  0.0550352  n/a   
 
 
-
 
NC_010512  Bcenmc03_6247  glucose-1-phosphate thymidylyltransferase  66.9 
 
 
298 aa  410  1e-113  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0385422  normal  0.992107 
 
 
-
 
NC_007948  Bpro_4018  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
305 aa  410  1e-113  Polaromonas sp. JS666  Bacteria  normal  normal  0.520137 
 
 
-
 
NC_010803  Clim_1781  glucose-1-phosphate thymidylyltransferase  67.71 
 
 
298 aa  409  1e-113  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000367124  n/a   
 
 
-
 
NC_010468  EcolC_1603  glucose-1-phosphate thymidylyltransferase  67.61 
 
 
292 aa  410  1e-113  Escherichia coli ATCC 8739  Bacteria  normal  0.982513  normal 
 
 
-
 
NC_011663  Sbal223_1473  glucose-1-phosphate thymidylyltransferase  68.64 
 
 
287 aa  410  1e-113  Shewanella baltica OS223  Bacteria  normal  0.905305  normal  0.376761 
 
 
-
 
NC_008785  BMASAVP1_A0924  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
297 aa  407  1e-113  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2458  glucose-1-phosphate thymidylyltransferase  68.06 
 
 
291 aa  409  1e-113  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3386  glucose-1-phosphate thymidylyltransferase  66.55 
 
 
298 aa  410  1e-113  Burkholderia ambifaria AMMD  Bacteria  normal  0.718729  normal 
 
 
-
 
NC_010622  Bphy_2318  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
297 aa  409  1e-113  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_008544  Bcen2424_6649  glucose-1-phosphate thymidylyltransferase  66.9 
 
 
298 aa  410  1e-113  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A2754  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
297 aa  407  1e-113  Burkholderia mallei NCTC 10229  Bacteria  normal  0.119435  n/a   
 
 
-
 
NC_009080  BMA10247_1851  glucose-1-phosphate thymidylyltransferase  69.4 
 
 
297 aa  407  1e-113  Burkholderia mallei NCTC 10247  Bacteria  normal  0.530858  n/a   
 
 
-
 
NC_008781  Pnap_3489  glucose-1-phosphate thymidylyltransferase  69.34 
 
 
295 aa  408  1e-113  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.374251 
 
 
-
 
NC_007510  Bcep18194_A3970  glucose-1-phosphate thymidylyltransferase  67.25 
 
 
297 aa  405  1.0000000000000001e-112  Burkholderia sp. 383  Bacteria  hitchhiker  0.00629806  normal  0.592005 
 
 
-
 
NC_007951  Bxe_A3726  glucose-1-phosphate thymidylyltransferase  66.78 
 
 
297 aa  407  1.0000000000000001e-112  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3121  glucose-1-phosphate thymidylyltransferase  67.72 
 
 
293 aa  404  1.0000000000000001e-112  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2652  glucose-1-phosphate thymidylyltransferase  65.51 
 
 
291 aa  405  1.0000000000000001e-112  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0621  glucose-1-phosphate thymidylyltransferase  67.25 
 
 
293 aa  405  1.0000000000000001e-112  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.252794 
 
 
-
 
NC_010551  BamMC406_0762  glucose-1-phosphate thymidylyltransferase  67.96 
 
 
297 aa  405  1.0000000000000001e-112  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
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