| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0244 |
|---|
| Symbol | rmlA |
|---|
| ID | 6989119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 290265 |
|---|
| End bp | 291149 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643378628 |
|---|
| Product | glucose-1-phosphate thymidylyltransferase RmlA |
|---|
| Protein accession | YP_002261783 |
|---|
| Protein GI | 209693855 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
|---|
| TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form
[TIGR01208] glucose-1-phosphate thymidylylransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGA TTGTTTTAGC CGGAGGCTCA GGCACACGCC TATATCCATT AACTCGTGGA
GTATCAAAGC AGTTATTACC TATTTACGAC AAACCAATGG TGTTTTATCC GATATCGACA
TTAATGCTCG CCGGTATTAA AGATATTTTA ATTATCACTA CTCCAGAAGA TAACGCAGGT
TTTAAACGCT TATTAGGCGA TGGCTCTGAT TTTGGGATTA ACCTTGAATA CGCAATTCAA
CCAAGCCCTG ATGGTTTAGC TCAAGCTTTT ATTATTGGCG AAGAGTTCAT TGGTGATGAC
CCAGTCTGCT TAGTACTTGG TGATAATATT TTCTATGGTC AATCTTTCTC TAAAACGTTA
AAGAATGCGG CTTCACGTGA CTTAGGTGCC ACCGTATTTG GTTATCAAGT AAAAGACCCA
GAGCGTTTTG GTGTGGTTGA GTTTGATGAA AAAATGAAAG CAATCTCAAT TGAAGAAAAG
CCACTAAAAC CTAAATCGAA TTATGCGGTG ACAGGATTAT ACTTTTACGA TAACCGCGTA
GTTGAAATGG CAAAACAAGT TAAGCCTTCT CATCGTGGTG AGCTTGAAAT TACCACGCTT
AATGAAATGT ATCTTAACGA TGGTTCTCTT AATGTTGAAT TATTAGCTCG TGGCTTTGCG
TGGCTAGATA CAGGGACTCA TGAGAGTCTG CATGAAGCCT CTTCATTTGT GCAAACCATT
GAGCATATAC AAGGCTTAAA AGTGGCGTGT TTAGAAGAAA TATCATGGCG TAATGGTTGG
TTATCAGATG AGCAAATATT AGATCTCGCA ACCCCGATGA TGAAGAATGA GTATGGCCAA
TATTTAACCC GATTAATTAA CGATAATAAA CAGAAAGAAT TATAA
|
|---|
| Protein sequence | MKGIVLAGGS GTRLYPLTRG VSKQLLPIYD KPMVFYPIST LMLAGIKDIL IITTPEDNAG
FKRLLGDGSD FGINLEYAIQ PSPDGLAQAF IIGEEFIGDD PVCLVLGDNI FYGQSFSKTL
KNAASRDLGA TVFGYQVKDP ERFGVVEFDE KMKAISIEEK PLKPKSNYAV TGLYFYDNRV
VEMAKQVKPS HRGELEITTL NEMYLNDGSL NVELLARGFA WLDTGTHESL HEASSFVQTI
EHIQGLKVAC LEEISWRNGW LSDEQILDLA TPMMKNEYGQ YLTRLINDNK QKEL
|
|---|
| |