More than 300 homologs were found in PanDaTox collection
for query gene PC1_1299 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_1299  glucose-1-phosphate thymidylyltransferase  100 
 
 
291 aa  594  1e-169  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0166  glucose-1-phosphate thymidylyltransferase  79.09 
 
 
293 aa  469  1.0000000000000001e-131  Serratia proteamaculans 568  Bacteria  normal  0.455037  normal 
 
 
-
 
NC_010465  YPK_4028  glucose-1-phosphate thymidylyltransferase  77.35 
 
 
310 aa  464  9.999999999999999e-131  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0187  glucose-1-phosphate thymidylyltransferase  77.35 
 
 
293 aa  464  9.999999999999999e-131  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0517  glucose-1-phosphate thymidylyltransferase  77.35 
 
 
293 aa  464  9.999999999999999e-131  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03667  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4187  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4006  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4300  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli E24377A  Bacteria  normal  0.671584  n/a   
 
 
-
 
NC_010468  EcolC_4214  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4134  glucose-1-phosphate thymidylyltransferase  77.7 
 
 
293 aa  457  9.999999999999999e-129  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.886764  normal 
 
 
-
 
NC_010658  SbBS512_E4132  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03616  hypothetical protein  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4153  glucose-1-phosphate thymidylyltransferase  78.05 
 
 
293 aa  460  9.999999999999999e-129  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5222  glucose-1-phosphate thymidylyltransferase  77.7 
 
 
293 aa  456  1e-127  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.350144  normal 
 
 
-
 
NC_013456  VEA_001807  glucose-1-phosphate thymidylyltransferase  74.31 
 
 
293 aa  455  1e-127  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3016  glucose-1-phosphate thymidylyltransferase  74.31 
 
 
289 aa  453  1.0000000000000001e-126  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00414881  n/a   
 
 
-
 
NC_012912  Dd1591_2858  glucose-1-phosphate thymidylyltransferase  74.83 
 
 
289 aa  453  1.0000000000000001e-126  Dickeya zeae Ech1591  Bacteria  normal  0.0450568  n/a   
 
 
-
 
NC_009800  EcHS_A2181  glucose-1-phosphate thymidylyltransferase  73.26 
 
 
289 aa  451  1.0000000000000001e-126  Escherichia coli HS  Bacteria  normal  0.112189  n/a   
 
 
-
 
NC_009438  Sputcn32_2539  glucose-1-phosphate thymidylyltransferase  75.87 
 
 
289 aa  450  1e-125  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3464  glucose-1-phosphate thymidylyltransferase  70 
 
 
293 aa  447  1e-125  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.349025 
 
 
-
 
NC_012880  Dd703_3286  glucose-1-phosphate thymidylyltransferase  72.13 
 
 
288 aa  445  1.0000000000000001e-124  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3186  glucose-1-phosphate-thymidylyltransferase  74.83 
 
 
304 aa  447  1.0000000000000001e-124  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0244  glucose-1-phosphate thymidylyltransferase RmlA  72.57 
 
 
294 aa  445  1.0000000000000001e-124  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2889  glucose-1-phosphate thymidylyltransferase  74.83 
 
 
286 aa  445  1.0000000000000001e-124  Shewanella baltica OS155  Bacteria  normal  0.4055  n/a   
 
 
-
 
NC_011312  VSAL_I0179  glucose-1-phosphate thymidylyltransferase RmlA  72.57 
 
 
294 aa  445  1.0000000000000001e-124  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1380  glucose-1-phosphate thymidylyltransferase  74.74 
 
 
286 aa  441  1e-123  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_009997  Sbal195_3029  glucose-1-phosphate thymidylyltransferase  73.08 
 
 
291 aa  440  9.999999999999999e-123  Shewanella baltica OS195  Bacteria  normal  normal  0.173381 
 
 
-
 
NC_007954  Sden_2662  glucose-1-phosphate thymidylyltransferase  73.52 
 
 
289 aa  437  9.999999999999999e-123  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I3019  glucose-1-phosphate thymidyl transferase  71.18 
 
 
295 aa  440  9.999999999999999e-123  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.313086  n/a   
 
 
-
 
NC_011663  Sbal223_1473  glucose-1-phosphate thymidylyltransferase  71.78 
 
 
287 aa  435  1e-121  Shewanella baltica OS223  Bacteria  normal  0.905305  normal  0.376761 
 
 
-
 
NC_007969  Pcryo_0625  glucose-1-phosphate thymidylyltransferase  72.82 
 
 
290 aa  434  1e-121  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.150141 
 
 
-
 
NC_008345  Sfri_2829  glucose-1-phosphate thymidylyltransferase  72.13 
 
 
289 aa  434  1e-121  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0574416  n/a   
 
 
-
 
NC_013512  Sdel_1786  glucose-1-phosphate thymidylyltransferase  71.53 
 
 
292 aa  432  1e-120  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1319  glucose-1-phosphate thymidylyltransferase  72.76 
 
 
291 aa  430  1e-119  Shewanella sp. MR-4  Bacteria  normal  normal  0.0322301 
 
 
-
 
NC_007492  Pfl01_4056  glucose-1-phosphate thymidylyltransferase  70.18 
 
 
296 aa  426  1e-118  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.340468 
 
 
-
 
NC_007912  Sde_2130  glucose-1-phosphate thymidylyltransferase  69.69 
 
 
288 aa  426  1e-118  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1402  glucose-1-phosphate thymidylyltransferase  69.58 
 
 
291 aa  425  1e-118  Shewanella loihica PV-4  Bacteria  normal  decreased coverage  0.00196644 
 
 
-
 
NC_011662  Tmz1t_3810  glucose-1-phosphate thymidylyltransferase  69.69 
 
 
292 aa  423  1e-117  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1079  glucose-1-phosphate thymidylyltransferase  69.47 
 
 
296 aa  420  1e-116  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.857116  n/a   
 
 
-
 
NC_007204  Psyc_1214  glucose-1-phosphate thymidylyltransferase  68.51 
 
 
296 aa  419  1e-116  Psychrobacter arcticus 273-4  Bacteria  normal  0.942362  decreased coverage  0.00289209 
 
 
-
 
NC_013512  Sdel_1798  glucose-1-phosphate thymidylyltransferase  68.64 
 
 
287 aa  420  1e-116  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1399  glucose-1-phosphate thymidylyltransferase  69.1 
 
 
290 aa  420  1e-116  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2899  glucose-1-phosphate thymidylyltransferase  71.43 
 
 
287 aa  418  1e-116  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3933  glucose-1-phosphate thymidylyltransferase  68.77 
 
 
296 aa  417  1e-116  Pseudomonas putida F1  Bacteria  normal  0.527502  normal  0.192647 
 
 
-
 
NC_009654  Mmwyl1_0838  glucose-1-phosphate thymidylyltransferase  67.47 
 
 
293 aa  414  1e-114  Marinomonas sp. MWYL1  Bacteria  normal  0.22071  normal 
 
 
-
 
NC_009439  Pmen_4290  glucose-1-phosphate thymidylyltransferase  69.44 
 
 
290 aa  412  1e-114  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.314543 
 
 
-
 
NC_013162  Coch_2130  glucose-1-phosphate thymidylyltransferase  68.6 
 
 
293 aa  414  1e-114  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0555  glucose-1-phosphate thymidylyltransferase  66.55 
 
 
296 aa  409  1e-113  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1270  glucose-1-phosphate thymidylyltransferase  66.09 
 
 
289 aa  407  1e-113  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.106852  normal  0.0645307 
 
 
-
 
NC_004116  SAG1200  glucose-1-phosphate thymidylyltransferase  66.78 
 
 
289 aa  407  1.0000000000000001e-112  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0702  glucose-1-phosphate thymidylyltransferase  66.2 
 
 
307 aa  405  1.0000000000000001e-112  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00504967  normal 
 
 
-
 
NC_011369  Rleg2_1181  glucose-1-phosphate thymidylyltransferase  65.74 
 
 
289 aa  405  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.25108  normal  0.28241 
 
 
-
 
NC_008228  Patl_2131  glucose-1-phosphate thymidylyltransferase  66.32 
 
 
297 aa  404  1.0000000000000001e-112  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0200  glucose-1-phosphate thymidylyltransferase  67.13 
 
 
289 aa  405  1.0000000000000001e-112  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.310491  n/a   
 
 
-
 
NC_008700  Sama_2240  glucose-1-phosphate thymidylyltransferase  66.2 
 
 
305 aa  407  1.0000000000000001e-112  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.572666 
 
 
-
 
CP001637  EcDH1_1618  glucose-1-phosphate thymidylyltransferase  65.16 
 
 
293 aa  401  1e-111  Escherichia coli DH1  Bacteria  normal  0.0952229  n/a   
 
 
-
 
NC_007514  Cag_0512  glucose-1-phosphate thymidylyltransferase, long form  66.55 
 
 
295 aa  404  1e-111  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2101  glucose-1-phosphate thymidylyltransferase  66.2 
 
 
294 aa  404  1e-111  Synechococcus elongatus PCC 7942  Bacteria  normal  0.338319  normal 
 
 
-
 
NC_013204  Elen_2049  glucose-1-phosphate thymidylyltransferase  67.24 
 
 
300 aa  402  1e-111  Eggerthella lenta DSM 2243  Bacteria  normal  0.635858  normal 
 
 
-
 
NC_009253  Dred_3038  glucose-1-phosphate thymidylyltransferase  65.61 
 
 
292 aa  402  1e-111  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1224  glucose-1-phosphate thymidyl transferase  66.43 
 
 
289 aa  403  1e-111  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1998  glucose-1-phosphate thymidylyltransferase  67.47 
 
 
299 aa  403  1e-111  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00000687148  n/a   
 
 
-
 
NC_011060  Ppha_2300  glucose-1-phosphate thymidylyltransferase  65.05 
 
 
293 aa  397  9.999999999999999e-111  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.390759  n/a   
 
 
-
 
NC_011830  Dhaf_4472  glucose-1-phosphate thymidylyltransferase  65.85 
 
 
292 aa  399  9.999999999999999e-111  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0455332  n/a   
 
 
-
 
NC_007512  Plut_0416  glucose-1-phosphate thymidylyltransferase, long form  66.78 
 
 
292 aa  399  9.999999999999999e-111  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_4290  glucose-1-phosphate thymidylyltransferase  64.34 
 
 
294 aa  399  9.999999999999999e-111  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4018  glucose-1-phosphate thymidylyltransferase  65.16 
 
 
305 aa  398  9.999999999999999e-111  Polaromonas sp. JS666  Bacteria  normal  normal  0.520137 
 
 
-
 
NC_010468  EcolC_1603  glucose-1-phosphate thymidylyltransferase  64.24 
 
 
292 aa  399  9.999999999999999e-111  Escherichia coli ATCC 8739  Bacteria  normal  0.982513  normal 
 
 
-
 
NC_010002  Daci_1277  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
296 aa  398  9.999999999999999e-111  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1194  glucose-1-phosphate thymidylyltransferase  64.24 
 
 
292 aa  399  9.999999999999999e-111  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01945  glucose-1-phosphate thymidylyltransferase  63.89 
 
 
292 aa  397  1e-109  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2330  glucose-1-phosphate thymidylyltransferase  63.89 
 
 
292 aa  395  1e-109  Escherichia coli E24377A  Bacteria  normal  0.0550352  n/a   
 
 
-
 
NC_007005  Psyr_0924  glucose-1-phosphate thymidylyltransferase, long form  64.11 
 
 
293 aa  396  1e-109  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_007298  Daro_1238  glucose-1-phosphate thymidylyltransferase  64.46 
 
 
296 aa  396  1e-109  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.981269 
 
 
-
 
NC_008782  Ajs_0539  glucose-1-phosphate thymidylyltransferase  64.81 
 
 
294 aa  395  1e-109  Acidovorax sp. JS42  Bacteria  normal  0.911631  normal  0.057049 
 
 
-
 
NC_009656  PSPA7_5902  glucose-1-phosphate thymidylyltransferase  64.11 
 
 
293 aa  395  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2277  glucose-1-phosphate thymidylyltransferase  63.64 
 
 
294 aa  395  1e-109  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000187637 
 
 
-
 
NC_008060  Bcen_0390  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
297 aa  394  1e-109  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2319  glucose-1-phosphate thymidylyltransferase  64.11 
 
 
293 aa  395  1e-109  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.103885 
 
 
-
 
NC_011094  SeSA_A2328  glucose-1-phosphate thymidylyltransferase  63.99 
 
 
294 aa  396  1e-109  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.196545 
 
 
-
 
NC_008347  Mmar10_2458  glucose-1-phosphate thymidylyltransferase  66.67 
 
 
291 aa  397  1e-109  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1395  glucose-1-phosphate thymidylyltransferase  64.11 
 
 
296 aa  395  1e-109  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1570  dTDP-glucose pyrophosphorylase  65.62 
 
 
298 aa  397  1e-109  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1406  glucose-1-phosphate thymidylyltransferase  64.58 
 
 
290 aa  395  1e-109  Magnetococcus sp. MC-1  Bacteria  normal  0.0680028  normal 
 
 
-
 
NC_013173  Dbac_2558  glucose-1-phosphate thymidylyltransferase  63.29 
 
 
295 aa  395  1e-109  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4130  glucose-1-phosphate thymidylyltransferase  65.05 
 
 
294 aa  395  1e-109  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.000000069205 
 
 
-
 
NC_007347  Reut_A0714  glucose-1-phosphate thymidylyltransferase  63.41 
 
 
295 aa  392  1e-108  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1470  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
312 aa  394  1e-108  Burkholderia thailandensis E264  Bacteria  normal  0.759037  n/a   
 
 
-
 
NC_011205  SeD_A2435  glucose-1-phosphate thymidylyltransferase  62.94 
 
 
294 aa  391  1e-108  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0000704371 
 
 
-
 
NC_010508  Bcenmc03_0843  glucose-1-phosphate thymidylyltransferase  63.41 
 
 
297 aa  392  1e-108  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0237145 
 
 
-
 
NC_010831  Cphamn1_1894  glucose-1-phosphate thymidylyltransferase  65.52 
 
 
292 aa  393  1e-108  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.284713  normal  0.0266706 
 
 
-
 
NC_010831  Cphamn1_1919  glucose-1-phosphate thymidylyltransferase  65.96 
 
 
298 aa  391  1e-108  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.2077 
 
 
-
 
NC_007951  Bxe_A3801  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
292 aa  391  1e-108  Burkholderia xenovorans LB400  Bacteria  normal  0.636815  normal 
 
 
-
 
NC_009719  Plav_3308  glucose-1-phosphate thymidylyltransferase  64.58 
 
 
300 aa  393  1e-108  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0242939  normal  0.20305 
 
 
-
 
NC_010622  Bphy_2318  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
297 aa  392  1e-108  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_009436  Ent638_2652  glucose-1-phosphate thymidylyltransferase  63.41 
 
 
291 aa  393  1e-108  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2220  glucose-1-phosphate thymidylyltransferase  63.29 
 
 
294 aa  394  1e-108  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.281714  n/a   
 
 
-
 
NC_008542  Bcen2424_0872  glucose-1-phosphate thymidylyltransferase  63.76 
 
 
297 aa  394  1e-108  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0865  glucose-1-phosphate thymidylyltransferase  62.2 
 
 
294 aa  392  1e-108  Elusimicrobium minutum Pei191  Bacteria  normal  hitchhiker  0.0000000171087 
 
 
-
 
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