More than 300 homologs were found in PanDaTox collection
for query gene Francci3_3569 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_3569  binding-protein-dependent transport systems inner membrane component  100 
 
 
345 aa  668    Frankia sp. CcI3  Bacteria  normal  0.0917022  normal 
 
 
-
 
NC_009921  Franean1_1174  binding-protein-dependent transport systems inner membrane component  73.33 
 
 
367 aa  425  1e-118  Frankia sp. EAN1pec  Bacteria  normal  0.0829949  normal  0.133993 
 
 
-
 
NC_013510  Tcur_1033  binding-protein-dependent transport systems inner membrane component  58.04 
 
 
291 aa  302  7.000000000000001e-81  Thermomonospora curvata DSM 43183  Bacteria  normal  0.806375  n/a   
 
 
-
 
NC_013595  Sros_9278  binding-protein-dependent transport systems inner membrane component  55.51 
 
 
291 aa  281  1e-74  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0712  binding-protein-dependent transport systems inner membrane component  40.92 
 
 
302 aa  208  1e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.900284  n/a   
 
 
-
 
NC_013235  Namu_4372  binding-protein-dependent transport systems inner membrane component  40.34 
 
 
300 aa  188  1e-46  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_013131  Caci_4302  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
441 aa  186  4e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0502009  hitchhiker  0.0000630788 
 
 
-
 
NC_013093  Amir_1232  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
319 aa  185  1.0000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7382  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
294 aa  176  8e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.916295 
 
 
-
 
NC_008541  Arth_3115  binding-protein-dependent transport systems inner membrane component  39.09 
 
 
321 aa  160  2e-38  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2814  binding-protein-dependent transport systems inner membrane component  40 
 
 
320 aa  156  5.0000000000000005e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00107512 
 
 
-
 
NC_012034  Athe_1184  binding-protein-dependent transport systems inner membrane component  37.89 
 
 
264 aa  152  8e-36  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0191984  n/a   
 
 
-
 
NC_009675  Anae109_0428  binding-protein-dependent transport systems inner membrane component  41.35 
 
 
254 aa  150  3e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0356148  normal 
 
 
-
 
NC_011145  AnaeK_4113  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
245 aa  146  4.0000000000000006e-34  Anaeromyxobacter sp. K  Bacteria  normal  0.0627503  n/a   
 
 
-
 
NC_008009  Acid345_0827  ABC aliphatic sulfonate transporter, inner membrane subunit  35.74 
 
 
252 aa  145  7.0000000000000006e-34  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.819281  normal 
 
 
-
 
NC_011891  A2cp1_4139  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
245 aa  145  8.000000000000001e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_10010  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  37.5 
 
 
307 aa  143  5e-33  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00312857  n/a   
 
 
-
 
NC_010655  Amuc_0407  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
263 aa  139  1e-31  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_1283  binding-protein-dependent transporter inner membrane protein  35.17 
 
 
252 aa  137  4e-31  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0507526 
 
 
-
 
NC_010655  Amuc_1295  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
259 aa  135  8e-31  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3998  ABC transporter, inner membrane subunit  37.56 
 
 
253 aa  129  8.000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.451031  n/a   
 
 
-
 
NC_008025  Dgeo_1412  binding-protein-dependent transport systems inner membrane component  40.61 
 
 
277 aa  124  3e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.72654  normal  0.222261 
 
 
-
 
NC_007517  Gmet_0998  binding-protein dependent transport system inner membrane protein  30.42 
 
 
260 aa  123  5e-27  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.944594 
 
 
-
 
NC_007406  Nwi_0673  binding-protein dependent transport system inner membrane protein  32.5 
 
 
275 aa  114  2.0000000000000002e-24  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0666321  normal  0.331074 
 
 
-
 
NC_012560  Avin_30900  ABC transporter, permease protein  32.21 
 
 
288 aa  109  8.000000000000001e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  31.86 
 
 
265 aa  107  4e-22  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
265 aa  106  7e-22  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  31.86 
 
 
265 aa  105  8e-22  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  29.17 
 
 
261 aa  105  1e-21  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  31.86 
 
 
265 aa  105  1e-21  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_011004  Rpal_1584  binding-protein-dependent transport systems inner membrane component  31.18 
 
 
288 aa  104  3e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3612  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
276 aa  103  6e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
285 aa  102  9e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
264 aa  102  1e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  28.19 
 
 
306 aa  102  1e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  31.7 
 
 
264 aa  102  1e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  32 
 
 
260 aa  101  2e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
305 aa  101  2e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  31.86 
 
 
262 aa  100  3e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0116  membrane protein  31.86 
 
 
281 aa  100  4e-20  Methylibium petroleiphilum PM1  Bacteria  normal  0.0935043  hitchhiker  0.000854026 
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  30 
 
 
264 aa  100  5e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  30 
 
 
264 aa  100  5e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6691  putative ABC transporter  35.1 
 
 
288 aa  100  5e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  31.86 
 
 
262 aa  99.8  6e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  30 
 
 
264 aa  99.4  8e-20  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_010087  Bmul_6047  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
292 aa  97.8  2e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.309315 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
319 aa  97.8  2e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_010625  Bphy_6203  binding-protein-dependent transport systems inner membrane component  28.14 
 
 
284 aa  97.8  2e-19  Burkholderia phymatum STM815  Bacteria  normal  0.780444  normal  0.280504 
 
 
-
 
NC_007951  Bxe_A2492  ABC aliphatic sulfonates transporter, innermembrane subunit  30.36 
 
 
280 aa  97.1  4e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.773133 
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  31 
 
 
295 aa  97.1  4e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
267 aa  96.7  5e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0552  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
286 aa  96.7  5e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.973794  normal 
 
 
-
 
NC_007492  Pfl01_3295  binding-protein dependent transport system inner membrane protein  29.5 
 
 
279 aa  96.7  5e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  28.57 
 
 
250 aa  96.7  6e-19  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_007005  Psyr_4875  binding-protein dependent transport system inner membrane protein  28.95 
 
 
265 aa  96.7  6e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746085  normal 
 
 
-
 
NC_010681  Bphyt_1745  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
280 aa  96.7  6e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
263 aa  96.3  7e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3601  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
292 aa  96.3  7e-19  Burkholderia phymatum STM815  Bacteria  normal  0.475828  normal 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  30.11 
 
 
274 aa  95.9  9e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_008786  Veis_0766  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
260 aa  95.9  9e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1216  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
270 aa  95.9  9e-19  Ralstonia pickettii 12J  Bacteria  normal  normal  0.150226 
 
 
-
 
NC_010512  Bcenmc03_6194  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
295 aa  95.9  9e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  27.31 
 
 
265 aa  95.1  1e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1242  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
295 aa  95.5  1e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6590  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
295 aa  95.5  1e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.446699 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  30.18 
 
 
263 aa  95.5  1e-18  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  27.96 
 
 
253 aa  94.7  2e-18  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
263 aa  94.7  2e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2358  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.14 
 
 
269 aa  94.7  2e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.540869 
 
 
-
 
NC_011830  Dhaf_3643  binding-protein-dependent transport systems inner membrane component  26.29 
 
 
252 aa  95.1  2e-18  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000799696  n/a   
 
 
-
 
NC_004578  PSPTO_2787  ABC transporter, permease protein  30.83 
 
 
282 aa  94.4  3e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0328614  n/a   
 
 
-
 
NC_004578  PSPTO_5315  aliphatic sulfonates ABC transporter, permease protein  28.95 
 
 
265 aa  94  3e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0055  nitrate ABC transporter, inner membrane subunit  29.2 
 
 
256 aa  94.4  3e-18  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2515  binding-protein dependent transport system inner membrane protein  30.13 
 
 
282 aa  94.4  3e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.313862  normal 
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  29.74 
 
 
274 aa  94.4  3e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0966  binding-protein-dependent transport systems inner membrane component  27.5 
 
 
279 aa  93.6  4e-18  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.136509 
 
 
-
 
NC_010508  Bcenmc03_1539  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
270 aa  94  4e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0890555  normal 
 
 
-
 
NC_007778  RPB_2837  binding-protein dependent transport system inner membrane protein  31.94 
 
 
266 aa  93.6  4e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.115716  normal 
 
 
-
 
NC_008060  Bcen_1083  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
270 aa  93.6  4e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1563  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
270 aa  93.6  4e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
288 aa  93.6  5e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_009439  Pmen_4321  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
264 aa  93.6  5e-18  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.154719 
 
 
-
 
NC_009720  Xaut_1210  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
315 aa  93.2  6e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0750  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
284 aa  92.8  7e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.546304 
 
 
-
 
NC_003295  RSc1340  aliphatic sulfonate ABC transporter transmembrane protein  30.57 
 
 
264 aa  92.8  8e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0574559  normal 
 
 
-
 
NC_010084  Bmul_1669  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
273 aa  92.8  8e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.5369  normal  0.169212 
 
 
-
 
NC_007951  Bxe_A2172  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.31 
 
 
292 aa  92.8  8e-18  Burkholderia xenovorans LB400  Bacteria  normal  0.287546  normal 
 
 
-
 
NC_007517  Gmet_1900  binding-protein dependent transport system inner membrane protein  29.54 
 
 
252 aa  92  1e-17  Geobacter metallireducens GS-15  Bacteria  normal  0.128113  hitchhiker  0.000000000000910228 
 
 
-
 
NC_010551  BamMC406_1485  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
270 aa  92  1e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0156  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  32.33 
 
 
292 aa  92  1e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.557075  normal 
 
 
-
 
NC_014150  Bmur_1575  binding-protein-dependent transport systems inner membrane component  24.79 
 
 
266 aa  92  1e-17  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1648  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
283 aa  92.4  1e-17  Burkholderia phymatum STM815  Bacteria  normal  0.189471  normal  0.0804385 
 
 
-
 
NC_010505  Mrad2831_4373  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
308 aa  92  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4568  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
286 aa  92.4  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3151  binding-protein-dependent transport systems inner membrane component  27.93 
 
 
263 aa  91.3  2e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  29.61 
 
 
260 aa  91.7  2e-17  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_009720  Xaut_3453  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
296 aa  91.7  2e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  0.187514  normal 
 
 
-
 
NC_012856  Rpic12D_1279  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
272 aa  91.7  2e-17  Ralstonia pickettii 12D  Bacteria  normal  0.88893  normal  0.0504928 
 
 
-
 
NC_007510  Bcep18194_A4705  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  30.54 
 
 
270 aa  91.3  2e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0191  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
287 aa  91.3  2e-17  Pseudomonas putida GB-1  Bacteria  normal  0.466577  normal  0.686195 
 
 
-
 
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