More than 300 homologs were found in PanDaTox collection
for query gene Bind_3599 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010581  Bind_3599  LuxR family transcriptional regulator  100 
 
 		 235 aa  476  1e-133  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.161431  normal  1 
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  40 
 
 		 210 aa  77.8  0.0000000000001  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  39.23 
 
 		 210 aa  77.4  0.0000000000002  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  38.3 
 
 		 213 aa  75.9  0.0000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  35.47 
 
 		 216 aa  73.9  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  59.26 
 
 		 231 aa  72.4  0.000000000006  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  59.65 
 
 		 213 aa  72  0.000000000008  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  33.33 
 
 		 218 aa  71.6  0.000000000009  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  57.41 
 
 		 224 aa  71.2  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  40.23 
 
 		 220 aa  71.2  0.00000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  49.21 
 
 		 219 aa  71.6  0.00000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  37.27 
 
 		 207 aa  70.5  0.00000000002  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  47.62 
 
 		 220 aa  70.9  0.00000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  57.41 
 
 		 225 aa  70.5  0.00000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  70.5  0.00000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  70.5  0.00000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  57.41 
 
 		 224 aa  70.5  0.00000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  57.41 
 
 		 223 aa  70.5  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  57.41 
 
 		 224 aa  70.5  0.00000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  57.89 
 
 		 214 aa  70.9  0.00000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  47.62 
 
 		 219 aa  70.5  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  32.26 
 
 		 211 aa  70.9  0.00000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  70.9  0.00000000002  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  70.9  0.00000000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  47.37 
 
 		 215 aa  70.5  0.00000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  57.89 
 
 		 213 aa  70.1  0.00000000003  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  47.62 
 
 		 220 aa  69.7  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  56.14 
 
 		 221 aa  70.1  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  40.16 
 
 		 214 aa  69.7  0.00000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  35.94 
 
 		 211 aa  70.1  0.00000000003  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  56.14 
 
 		 221 aa  69.7  0.00000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  41.82 
 
 		 215 aa  69.3  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  46.03 
 
 		 219 aa  69.3  0.00000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  69.7  0.00000000004  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  69.7  0.00000000004  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.64 
 
 		 222 aa  69.7  0.00000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  47.62 
 
 		 238 aa  69.7  0.00000000004  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  53.97 
 
 		 222 aa  69.7  0.00000000004  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  31.2 
 
 		 209 aa  69.3  0.00000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  41.11 
 
 		 216 aa  68.6  0.00000000008  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  41.11 
 
 		 216 aa  68.6  0.00000000008  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  42.27 
 
 		 216 aa  68.6  0.00000000008  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  41.11 
 
 		 216 aa  68.6  0.00000000008  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  47.62 
 
 		 220 aa  68.6  0.00000000008  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  49.32 
 
 		 215 aa  68.2  0.00000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  56.36 
 
 		 215 aa  67.8  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  47.95 
 
 		 215 aa  67.8  0.0000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  42.86 
 
 		 216 aa  67.8  0.0000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  46.03 
 
 		 220 aa  67.8  0.0000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  32.77 
 
 		 209 aa  68.2  0.0000000001  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  31.01 
 
 		 209 aa  67  0.0000000002  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  34.43 
 
 		 222 aa  67.4  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  54.24 
 
 		 224 aa  67  0.0000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  37.63 
 
 		 219 aa  67.8  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  46.67 
 
 		 221 aa  67.4  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  37.38 
 
 		 220 aa  67  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  34.65 
 
 		 212 aa  67  0.0000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  37.1 
 
 		 220 aa  66.6  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal  1 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  52.38 
 
 		 228 aa  67  0.0000000003  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  27.18 
 
 		 221 aa  66.2  0.0000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  29.21 
 
 		 212 aa  66.2  0.0000000005  Caulobacter sp. K31  Bacteria  normal  1  normal  0.881689 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  49.21 
 
 		 217 aa  65.5  0.0000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  49.21 
 
 		 217 aa  65.5  0.0000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  57.69 
 
 		 215 aa  65.1  0.0000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  57.69 
 
 		 215 aa  65.1  0.0000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  54.55 
 
 		 218 aa  65.1  0.0000000008  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  43.04 
 
 		 244 aa  65.5  0.0000000008  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.322421 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  27.68 
 
 		 216 aa  65.1  0.0000000009  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  33.33 
 
 		 207 aa  65.1  0.0000000009  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  33.33 
 
 		 207 aa  65.1  0.0000000009  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  33.14 
 
 		 224 aa  64.7  0.000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  31.55 
 
 		 229 aa  65.1  0.000000001  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  43.04 
 
 		 216 aa  65.1  0.000000001  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  25.12 
 
 		 209 aa  63.5  0.000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  25.11 
 
 		 226 aa  64.3  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  28.7 
 
 		 226 aa  63.9  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  62 
 
 		 214 aa  63.5  0.000000002  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  27.05 
 
 		 203 aa  63.9  0.000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  26.48 
 
 		 242 aa  64.3  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  36.76 
 
 		 223 aa  63.5  0.000000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  62 
 
 		 214 aa  63.5  0.000000002  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33.33 
 
 		 213 aa  63.5  0.000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  52.63 
 
 		 226 aa  63.2  0.000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  29.22 
 
 		 227 aa  63.5  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  38.89 
 
 		 226 aa  63.2  0.000000003  Conexibacter woesei DSM 14684  Bacteria  normal  1  hitchhiker  0.00432991 
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  52.63 
 
 		 226 aa  63.2  0.000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0620794 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  36.84 
 
 		 221 aa  62.8  0.000000004  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  54.39 
 
 		 215 aa  63.2  0.000000004  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  41.41 
 
 		 221 aa  62.8  0.000000005  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008048  Sala_1000  LuxR family transcriptional regulator  38.68 
 
 		 195 aa  62.8  0.000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.745862  normal  1 
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  41.41 
 
 		 221 aa  62.8  0.000000005  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_009428  Rsph17025_1138  two component LuxR family transcriptional regulator  52.63 
 
 		 226 aa  62.8  0.000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.914207  normal  1 
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  42.86 
 
 		 219 aa  62.4  0.000000006  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  47.76 
 
 		 218 aa  62.4  0.000000006  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  29.47 
 
 		 214 aa  62.4  0.000000006  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  33.55 
 
 		 212 aa  62  0.000000007  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  50.79 
 
 		 223 aa  62  0.000000008  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  48 
 
 		 221 aa  62  0.000000008  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  34.29 
 
 		 217 aa  62  0.000000008  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  48 
 
 		 221 aa  61.6  0.00000001  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
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