More than 300 homologs were found in PanDaTox collection
for query gene Spea_3601 on replicon NC_009901
Organism: Shewanella pealeana ATCC 700345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009901  Spea_3601  response regulator receiver protein  100 
 
 
224 aa  457  9.999999999999999e-129  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0741  response regulator receiver protein  73.81 
 
 
210 aa  312  2.9999999999999996e-84  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.289134 
 
 
-
 
NC_009784  VIBHAR_05158  transcriptional regulatory protein CpxR  55.72 
 
 
209 aa  222  4e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_3443  response regulator receiver protein  36.63 
 
 
223 aa  149  3e-35  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  34.62 
 
 
478 aa  96.3  3e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  41.18 
 
 
451 aa  95.1  8e-19  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
458 aa  92.8  4e-18  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_007519  Dde_2355  two component Fis family transcriptional regulator  37.19 
 
 
465 aa  92.8  4e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.658958  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  40.34 
 
 
451 aa  92.4  5e-18  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  32.84 
 
 
485 aa  92.4  5e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0904  two component Fis family transcriptional regulator  36.67 
 
 
454 aa  92  7e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.629928  normal 
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  34.11 
 
 
458 aa  91.7  8e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_008751  Dvul_1117  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
462 aa  91.7  9e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.144471  normal  0.173796 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  40.34 
 
 
451 aa  91.3  1e-17  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  34.85 
 
 
470 aa  90.9  1e-17  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  38.79 
 
 
463 aa  91.3  1e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_007517  Gmet_3158  two component, sigma54 specific, Fis family transcriptional regulator  37.7 
 
 
462 aa  90.5  2e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2748  two component, sigma54 specific, transcriptional regulator, Fis family  34.97 
 
 
542 aa  90.5  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  39.32 
 
 
238 aa  89  6e-17  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  43.86 
 
 
471 aa  88.2  9e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  37.93 
 
 
451 aa  88.2  9e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2676  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0255  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1851  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  36.8 
 
 
513 aa  87.4  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_009080  BMA10247_2701  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0039  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
457 aa  87.8  1e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008785  BMASAVP1_A3276  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0042  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0042  DNA-binding response regulator  37.84 
 
 
225 aa  87.8  1e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  33.33 
 
 
470 aa  87.4  2e-16  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  39.47 
 
 
463 aa  87  2e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  31.01 
 
 
135 aa  87  2e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  36.13 
 
 
457 aa  86.7  3e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  37.72 
 
 
457 aa  85.5  6e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  38.14 
 
 
446 aa  85.5  6e-16  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  36.07 
 
 
461 aa  84.7  9e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  38.39 
 
 
478 aa  84.3  0.000000000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  36.75 
 
 
471 aa  84.7  0.000000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_010506  Swoo_1705  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
502 aa  84.3  0.000000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  31.82 
 
 
476 aa  84.7  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  39.29 
 
 
469 aa  84.7  0.000000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  35.04 
 
 
472 aa  84.3  0.000000000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  39.29 
 
 
470 aa  84.7  0.000000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
458 aa  84  0.000000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_008009  Acid345_3269  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
467 aa  84  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  39.47 
 
 
462 aa  84  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  33.85 
 
 
473 aa  82.8  0.000000000000003  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  42.11 
 
 
471 aa  83.2  0.000000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
439 aa  83.6  0.000000000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  38.39 
 
 
469 aa  83.2  0.000000000000003  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
469 aa  82.8  0.000000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_010084  Bmul_0032  two component transcriptional regulator  32.86 
 
 
225 aa  83.2  0.000000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
453 aa  83.2  0.000000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
447 aa  83.2  0.000000000000003  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  34.97 
 
 
233 aa  83.6  0.000000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_008554  Sfum_2622  two component, sigma54 specific, Fis family transcriptional regulator  33.93 
 
 
452 aa  83.2  0.000000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.788991  normal 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  29.75 
 
 
450 aa  83.2  0.000000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
450 aa  82.8  0.000000000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
469 aa  82.8  0.000000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  32.77 
 
 
461 aa  82.8  0.000000000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  39.25 
 
 
459 aa  82.4  0.000000000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0040  two component transcriptional regulator  34.04 
 
 
225 aa  82.4  0.000000000000005  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.617214  n/a   
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  32.74 
 
 
227 aa  82.4  0.000000000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_008390  Bamb_0022  two component transcriptional regulator  34.04 
 
 
225 aa  82.4  0.000000000000005  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  38.39 
 
 
473 aa  82.4  0.000000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_008542  Bcen2424_0030  two component transcriptional regulator  34.04 
 
 
225 aa  82.4  0.000000000000005  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0031  two component transcriptional regulator  34.04 
 
 
225 aa  82  0.000000000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0049  two component transcriptional regulator  34.04 
 
 
225 aa  82.4  0.000000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011728  BbuZS7_0791  acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor)  33.08 
 
 
451 aa  82  0.000000000000006  Borrelia burgdorferi ZS7  Bacteria  normal  0.261898  n/a   
 
 
-
 
NC_008740  Maqu_2826  two component, sigma54 specific, Fis family transcriptional regulator  39.67 
 
 
461 aa  82  0.000000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.244879  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
466 aa  82  0.000000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  32.5 
 
 
475 aa  82  0.000000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_008576  Mmc1_3600  two-component response regulator AlgB  32.9 
 
 
442 aa  82  0.000000000000007  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  37.5 
 
 
452 aa  82  0.000000000000007  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  36.8 
 
 
508 aa  81.6  0.000000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_009831  Ssed_2940  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
500 aa  81.6  0.000000000000008  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3251  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
465 aa  81.6  0.000000000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2782  two component, sigma54 specific, Fis family transcriptional regulator  34.21 
 
 
463 aa  81.6  0.000000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.795323  normal 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  35.65 
 
 
455 aa  81.6  0.000000000000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  35.65 
 
 
455 aa  81.6  0.000000000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  33.88 
 
 
457 aa  81.6  0.000000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  34.71 
 
 
464 aa  81.6  0.000000000000009  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  37.29 
 
 
447 aa  81.6  0.000000000000009  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  37.29 
 
 
447 aa  81.6  0.000000000000009  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  31.36 
 
 
467 aa  80.9  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  37.29 
 
 
447 aa  81.3  0.00000000000001  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_008577  Shewana3_2016  two component, sigma54 specific, Fis family transcriptional regulator  32.79 
 
 
493 aa  81.3  0.00000000000001  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00000590429 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  32.74 
 
 
235 aa  80.9  0.00000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  37.7 
 
 
466 aa  80.9  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  37.29 
 
 
447 aa  81.6  0.00000000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4444  response regulator receiver modulated metal dependent phosphohydrolase  29.41 
 
 
526 aa  80.9  0.00000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  39.5 
 
 
449 aa  81.3  0.00000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  31.09 
 
 
461 aa  80.5  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  36.44 
 
 
446 aa  80.1  0.00000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_1180  two component transcriptional regulator  37.59 
 
 
221 aa  80.9  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  31.75 
 
 
457 aa  80.9  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  34.71 
 
 
463 aa  80.5  0.00000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  34.59 
 
 
447 aa  80.5  0.00000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
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