147 homologs were found in PanDaTox collection
for query gene Shewmr7_2756 on replicon NC_008322
Organism: Shewanella sp. MR-7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  100 
 
 
202 aa  412  1e-114  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  94.06 
 
 
202 aa  369  1e-101  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  92.57 
 
 
202 aa  362  3e-99  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_004347  SO_1586  hypothetical protein  79.19 
 
 
200 aa  295  2e-79  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  72.28 
 
 
203 aa  244  8e-64  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  50.56 
 
 
190 aa  191  6e-48  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  53.19 
 
 
192 aa  185  3e-46  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  52.91 
 
 
192 aa  180  1e-44  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  42.86 
 
 
189 aa  124  7e-28  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  43.54 
 
 
190 aa  124  1e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  35.71 
 
 
190 aa  119  1.9999999999999998e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  42.47 
 
 
192 aa  119  3.9999999999999996e-26  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  30.81 
 
 
187 aa  75.5  0.0000000000005  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  20.53 
 
 
194 aa  72  0.000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  32.02 
 
 
196 aa  72  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  32.08 
 
 
191 aa  71.6  0.000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  28.75 
 
 
201 aa  70.1  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  25.84 
 
 
192 aa  69.7  0.00000000003  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  22.58 
 
 
188 aa  69.3  0.00000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  26.74 
 
 
196 aa  68.9  0.00000000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  31.17 
 
 
196 aa  68.2  0.00000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  31.43 
 
 
189 aa  67.8  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  26.63 
 
 
175 aa  67.4  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  29.76 
 
 
190 aa  67.4  0.0000000001  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.38 
 
 
192 aa  66.2  0.0000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  29.71 
 
 
189 aa  66.2  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  31.76 
 
 
198 aa  65.9  0.0000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  30.82 
 
 
199 aa  65.5  0.0000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  32.14 
 
 
208 aa  64.3  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  30.34 
 
 
203 aa  63.2  0.000000003  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  29.86 
 
 
227 aa  63.2  0.000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  28.19 
 
 
194 aa  62  0.000000005  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  28.57 
 
 
175 aa  62.4  0.000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  25.81 
 
 
196 aa  62  0.000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  25.53 
 
 
189 aa  62  0.000000006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  25 
 
 
194 aa  61.6  0.000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  30.97 
 
 
191 aa  61.6  0.000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  25.79 
 
 
198 aa  60.8  0.00000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  26.86 
 
 
194 aa  60.8  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  27.56 
 
 
196 aa  60.1  0.00000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  25.9 
 
 
190 aa  59.7  0.00000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
191 aa  59.3  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  29.08 
 
 
195 aa  58.5  0.00000007  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013132  Cpin_2716  putative transcriptional regulator, Crp/Fnr family  28.85 
 
 
189 aa  58.2  0.00000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  27.39 
 
 
191 aa  58.2  0.00000008  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  26.55 
 
 
193 aa  57.4  0.0000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  27.27 
 
 
187 aa  57  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  26.11 
 
 
194 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  25.44 
 
 
192 aa  56.6  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  27.47 
 
 
189 aa  57  0.0000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  23.12 
 
 
191 aa  56.2  0.0000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  26.92 
 
 
205 aa  55.8  0.0000004  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  29.5 
 
 
191 aa  55.8  0.0000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  25.64 
 
 
191 aa  56.2  0.0000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  26.75 
 
 
193 aa  55.5  0.0000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2799  cyclic nucleotide-binding domain-containing protein  27.17 
 
 
202 aa  55.5  0.0000006  Polaromonas sp. JS666  Bacteria  normal  0.208629  normal  0.300768 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  28.67 
 
 
208 aa  55.5  0.0000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  23.87 
 
 
194 aa  55.1  0.0000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  30.28 
 
 
197 aa  55.1  0.0000007  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  24.36 
 
 
198 aa  54.3  0.000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_009379  Pnuc_0636  cyclic nucleotide-binding protein  25.16 
 
 
205 aa  53.5  0.000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  23.94 
 
 
200 aa  53.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  29.81 
 
 
191 aa  53.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  23.74 
 
 
202 aa  53.1  0.000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  22.81 
 
 
190 aa  52.4  0.000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  22.52 
 
 
192 aa  52.4  0.000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  23.65 
 
 
190 aa  52  0.000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  22.29 
 
 
197 aa  52  0.000007  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  27.54 
 
 
189 aa  51.6  0.000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  24.18 
 
 
192 aa  51.6  0.000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  23.35 
 
 
189 aa  51.6  0.000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  23.65 
 
 
190 aa  51.6  0.000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  27.56 
 
 
192 aa  51.6  0.000008  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  20.78 
 
 
188 aa  51.2  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  27.92 
 
 
213 aa  50.8  0.00001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  27.1 
 
 
189 aa  50.8  0.00001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  26.92 
 
 
192 aa  51.2  0.00001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  23.72 
 
 
196 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  25 
 
 
193 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  22.83 
 
 
189 aa  50.1  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  23.57 
 
 
201 aa  50.4  0.00002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  24.06 
 
 
219 aa  50.4  0.00002  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_013132  Cpin_6710  putative transcriptional regulator, Crp/Fnr family  24.2 
 
 
189 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  23.2 
 
 
197 aa  50.1  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_012791  Vapar_4489  putative transcriptional regulator, Crp/Fnr family  26.45 
 
 
202 aa  49.3  0.00003  Variovorax paradoxus S110  Bacteria  normal  0.495414  n/a   
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
195 aa  48.9  0.00005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  25.53 
 
 
222 aa  48.9  0.00005  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  22.67 
 
 
189 aa  48.5  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  21.93 
 
 
195 aa  48.9  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2686  putative transcriptional regulator, Crp/Fnr family  27.12 
 
 
195 aa  48.1  0.00008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  27.15 
 
 
189 aa  48.1  0.00009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  22.5 
 
 
189 aa  47.8  0.0001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  23.73 
 
 
192 aa  47.8  0.0001  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_013037  Dfer_1771  putative transcriptional regulator, Crp/Fnr family  24.2 
 
 
188 aa  47.8  0.0001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.207903 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  22.82 
 
 
208 aa  46.6  0.0002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  22.16 
 
 
184 aa  47  0.0002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_008609  Ppro_1835  Crp/FNR family transcriptional regulator  24.74 
 
 
250 aa  46.2  0.0003  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0256984  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  28.28 
 
 
239 aa  46.2  0.0003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  23.7 
 
 
191 aa  45.8  0.0004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0484  putative transcriptional regulator, Crp/Fnr family  22.35 
 
 
189 aa  46.2  0.0004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.46296  normal 
 
 
-
 
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