More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4561 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4561  AsnC family transcriptional regulator  100 
 
 
156 aa  317  3.9999999999999996e-86  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00127893  normal  0.163186 
 
 
-
 
NC_007348  Reut_B4242  AsnC family transcriptional regulator  90.07 
 
 
176 aa  280  5.000000000000001e-75  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3954  AsnC family transcriptional regulator  76.97 
 
 
152 aa  242  9.999999999999999e-64  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4756  AsnC family transcriptional regulator  60.26 
 
 
165 aa  198  1.9999999999999998e-50  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0435  AsnC family transcriptional regulator  61.69 
 
 
157 aa  197  3.9999999999999996e-50  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7223  transcriptional regulator, AsnC family  61.04 
 
 
160 aa  197  5e-50  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2906  AsnC family transcriptional regulator  59.74 
 
 
168 aa  194  3e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1713  AsnC family transcriptional regulator  58.82 
 
 
160 aa  194  5.000000000000001e-49  Burkholderia sp. 383  Bacteria  normal  0.911969  normal 
 
 
-
 
NC_010086  Bmul_4306  AsnC family transcriptional regulator  57.52 
 
 
160 aa  191  3e-48  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.269184 
 
 
-
 
NC_008543  Bcen2424_4300  AsnC family transcriptional regulator  57.52 
 
 
160 aa  189  1e-47  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3217  AsnC family transcriptional regulator  57.52 
 
 
160 aa  189  1e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4066  AsnC family transcriptional regulator  57.52 
 
 
160 aa  189  1e-47  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4195  AsnC family transcriptional regulator  57.52 
 
 
160 aa  189  1e-47  Burkholderia ambifaria MC40-6  Bacteria  normal  0.203034  normal  0.136531 
 
 
-
 
NC_008391  Bamb_3718  AsnC family transcriptional regulator  57.52 
 
 
160 aa  189  1e-47  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.531548 
 
 
-
 
NC_010002  Daci_4321  AsnC family transcriptional regulator  57.64 
 
 
151 aa  176  1e-43  Delftia acidovorans SPH-1  Bacteria  normal  0.468859  normal  0.287831 
 
 
-
 
NC_007948  Bpro_4248  AsnC family transcriptional regulator  54.86 
 
 
152 aa  173  9e-43  Polaromonas sp. JS666  Bacteria  normal  0.953976  normal 
 
 
-
 
NC_008752  Aave_3144  AsnC family transcriptional regulator  54.86 
 
 
152 aa  173  9.999999999999999e-43  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18277  normal  0.966672 
 
 
-
 
NC_011992  Dtpsy_1745  transcriptional regulator, AsnC family  54.17 
 
 
155 aa  167  6e-41  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1942  AsnC family transcriptional regulator  54.17 
 
 
155 aa  167  6e-41  Acidovorax sp. JS42  Bacteria  normal  0.0292999  normal  0.532082 
 
 
-
 
NC_009720  Xaut_0213  AsnC family transcriptional regulator  46.9 
 
 
153 aa  142  2e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.757841 
 
 
-
 
NC_008686  Pden_2266  AsnC family transcriptional regulator  47.92 
 
 
153 aa  141  3e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.400993  normal  0.321257 
 
 
-
 
NC_009428  Rsph17025_2441  AsnC family transcriptional regulator  43.05 
 
 
152 aa  140  7e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.443821 
 
 
-
 
NC_012791  Vapar_2047  transcriptional regulator, AsnC family  50.35 
 
 
145 aa  139  9.999999999999999e-33  Variovorax paradoxus S110  Bacteria  normal  0.640465  n/a   
 
 
-
 
NC_007493  RSP_0722  AsnC family transcriptional regulator  43.33 
 
 
152 aa  139  9.999999999999999e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.777911  n/a   
 
 
-
 
NC_009667  Oant_0505  AsnC family transcriptional regulator  46.26 
 
 
181 aa  138  1.9999999999999998e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.287922  n/a   
 
 
-
 
NC_007492  Pfl01_5672  AsnC family transcriptional regulator  47.59 
 
 
157 aa  139  1.9999999999999998e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3685  AsnC family transcriptional regulator  47.3 
 
 
174 aa  139  1.9999999999999998e-32  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.930939  n/a   
 
 
-
 
NC_008043  TM1040_3629  AsnC family transcriptional regulator  45.14 
 
 
153 aa  139  1.9999999999999998e-32  Ruegeria sp. TM1040  Bacteria  normal  normal  0.217189 
 
 
-
 
NC_009049  Rsph17029_2377  AsnC family transcriptional regulator  43.33 
 
 
152 aa  139  1.9999999999999998e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.408866 
 
 
-
 
NC_008709  Ping_3352  transcriptional regulator of AsnC/Lrp family protein  48.3 
 
 
158 aa  137  3.9999999999999997e-32  Psychromonas ingrahamii 37  Bacteria  normal  0.868338  normal  0.404848 
 
 
-
 
NC_012912  Dd1591_0019  transcriptional regulator, AsnC family  44.44 
 
 
156 aa  137  6e-32  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1990  transcriptional regulator, AsnC family  49.3 
 
 
161 aa  137  7.999999999999999e-32  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.141708  n/a   
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  45.75 
 
 
167 aa  137  7.999999999999999e-32  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_011206  Lferr_1659  transcriptional regulator, AsnC family  49.3 
 
 
161 aa  137  7.999999999999999e-32  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.31019  normal  0.273663 
 
 
-
 
NC_007511  Bcep18194_B0321  AsnC family transcriptional regulator  45.58 
 
 
154 aa  136  8.999999999999999e-32  Burkholderia sp. 383  Bacteria  normal  0.396921  normal  0.759539 
 
 
-
 
NC_008740  Maqu_1733  AsnC family transcriptional regulator  44.76 
 
 
165 aa  135  1e-31  Marinobacter aquaeolei VT8  Bacteria  normal  0.017814  n/a   
 
 
-
 
NC_007958  RPD_2213  regulatory proteins, AsnC/Lrp  47.55 
 
 
153 aa  135  1e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.214008  normal  0.442221 
 
 
-
 
NC_009485  BBta_2829  AsnC family transcriptional regulator  48.25 
 
 
153 aa  135  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  44.44 
 
 
167 aa  135  2e-31  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_013889  TK90_1709  transcriptional regulator, AsnC family  48.28 
 
 
172 aa  135  2e-31  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.741571  normal  0.587028 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  45.27 
 
 
165 aa  135  2e-31  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  43.79 
 
 
167 aa  134  4e-31  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_009656  PSPA7_5122  putative transcriptional regulator  44.74 
 
 
157 aa  134  6.0000000000000005e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2996  AsnC family transcriptional regulator  45.52 
 
 
156 aa  134  6.0000000000000005e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0252668  n/a   
 
 
-
 
NC_008463  PA14_58510  AsnC family transcriptional regulator  44.74 
 
 
157 aa  134  6.0000000000000005e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1530  AsnC family transcriptional regulator  43.36 
 
 
157 aa  133  8e-31  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.14965  normal  0.648234 
 
 
-
 
NC_007511  Bcep18194_B2899  AsnC family transcriptional regulator  44.52 
 
 
154 aa  133  9e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1165  AsnC family transcriptional regulator  49.24 
 
 
147 aa  133  9e-31  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.403646 
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  44.44 
 
 
167 aa  133  9e-31  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_011146  Gbem_1175  transcriptional regulator, AsnC family  46 
 
 
157 aa  132  9.999999999999999e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0512  AsnC family transcriptional regulator  45.45 
 
 
158 aa  133  9.999999999999999e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.981269 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  44.44 
 
 
167 aa  133  9.999999999999999e-31  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_007778  RPB_3252  AsnC family transcriptional regulator  46.85 
 
 
153 aa  133  9.999999999999999e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  43.51 
 
 
166 aa  133  9.999999999999999e-31  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_011662  Tmz1t_0193  transcriptional regulator, AsnC family  44.59 
 
 
161 aa  132  1.9999999999999998e-30  Thauera sp. MZ1T  Bacteria  normal  0.740343  n/a   
 
 
-
 
NC_010086  Bmul_5229  AsnC family transcriptional regulator  44.14 
 
 
152 aa  132  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.104749  normal 
 
 
-
 
NC_012880  Dd703_0018  transcriptional regulator, AsnC family  42.36 
 
 
156 aa  132  1.9999999999999998e-30  Dickeya dadantii Ech703  Bacteria  normal  0.38788  n/a   
 
 
-
 
NC_011666  Msil_1640  transcriptional regulator, AsnC family  41.89 
 
 
154 aa  132  1.9999999999999998e-30  Methylocella silvestris BL2  Bacteria  n/a    normal  0.113237 
 
 
-
 
NC_007794  Saro_1351  AsnC family transcriptional regulator  43.92 
 
 
155 aa  132  1.9999999999999998e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.986607  n/a   
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  44.06 
 
 
164 aa  131  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_009952  Dshi_0245  transcriptional regulator  46.53 
 
 
169 aa  131  3.9999999999999996e-30  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_010515  Bcenmc03_4941  AsnC family transcriptional regulator  43.54 
 
 
154 aa  131  3.9999999999999996e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.342761  normal  0.28224 
 
 
-
 
NC_007912  Sde_2299  AsnC family transcriptional regulator  46.85 
 
 
156 aa  131  3.9999999999999996e-30  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00073028 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  44.44 
 
 
168 aa  131  3.9999999999999996e-30  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_010552  BamMC406_3278  AsnC family transcriptional regulator  44.14 
 
 
152 aa  130  5e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.882377 
 
 
-
 
NC_008391  Bamb_5136  AsnC family transcriptional regulator  43.84 
 
 
177 aa  130  5e-30  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.944237 
 
 
-
 
NC_007488  RSP_3973  AsnC family transcriptional regulator  44.9 
 
 
154 aa  130  6.999999999999999e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.918788  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  130  6.999999999999999e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_010515  Bcenmc03_4159  AsnC family transcriptional regulator  44.14 
 
 
152 aa  130  7.999999999999999e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.409138  normal 
 
 
-
 
NC_007908  Rfer_2022  AsnC family transcriptional regulator  45.81 
 
 
157 aa  130  7.999999999999999e-30  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0275  AsnC family transcriptional regulator  41.61 
 
 
156 aa  130  7.999999999999999e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3357  AsnC family transcriptional regulator  44.14 
 
 
152 aa  130  7.999999999999999e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  0.773724  normal 
 
 
-
 
NC_008044  TM1040_2738  AsnC family transcriptional regulator  43.33 
 
 
152 aa  130  7.999999999999999e-30  Ruegeria sp. TM1040  Bacteria  normal  0.579335  normal 
 
 
-
 
NC_008061  Bcen_4810  AsnC family transcriptional regulator  44.14 
 
 
152 aa  130  7.999999999999999e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.402994  n/a   
 
 
-
 
NC_007963  Csal_2516  AsnC family transcriptional regulator  46.85 
 
 
169 aa  130  9e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  43.45 
 
 
164 aa  130  9e-30  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  44.44 
 
 
164 aa  130  1.0000000000000001e-29  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_008835  BMA10229_0576  AsnC family transcriptional regulator  40.69 
 
 
160 aa  129  1.0000000000000001e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  129  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_008784  BMASAVP1_0301  AsnC family transcriptional regulator  40.69 
 
 
160 aa  129  1.0000000000000001e-29  Burkholderia mallei SAVP1  Bacteria  normal  0.0951908  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  130  1.0000000000000001e-29  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  130  1.0000000000000001e-29  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_010322  PputGB1_3168  AsnC family transcriptional regulator  44.74 
 
 
154 aa  129  1.0000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.714414  normal 
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  130  1.0000000000000001e-29  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  130  1.0000000000000001e-29  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_009078  BURPS1106A_A1253  AsnC family transcriptional regulator  40.69 
 
 
160 aa  129  1.0000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  44.14 
 
 
164 aa  130  1.0000000000000001e-29  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  129  1.0000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  43.45 
 
 
164 aa  129  1.0000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  45.14 
 
 
158 aa  130  1.0000000000000001e-29  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  44.44 
 
 
164 aa  129  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  44.14 
 
 
164 aa  130  1.0000000000000001e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>