More than 300 homologs were found in PanDaTox collection
for query gene Namu_3848 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  100 
 
 
320 aa  636    Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_009921  Franean1_7038  binding-protein-dependent transport systems inner membrane component  55.24 
 
 
309 aa  299  5e-80  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  47.83 
 
 
310 aa  270  2.9999999999999997e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  50.57 
 
 
314 aa  262  4.999999999999999e-69  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_010524  Lcho_3300  binding-protein-dependent transport systems inner membrane component  45.35 
 
 
374 aa  254  2.0000000000000002e-66  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  47.97 
 
 
294 aa  248  1e-64  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0229  binding-protein-dependent transport systems inner membrane component  46.41 
 
 
312 aa  244  9.999999999999999e-64  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.772545  normal  0.492978 
 
 
-
 
NC_009654  Mmwyl1_0231  binding-protein-dependent transport systems inner membrane component  56.85 
 
 
359 aa  238  1e-61  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  43.43 
 
 
299 aa  231  2e-59  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  40.89 
 
 
299 aa  228  1e-58  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  40.42 
 
 
289 aa  221  1.9999999999999999e-56  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  38.87 
 
 
310 aa  220  3e-56  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  40.82 
 
 
317 aa  214  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  42.01 
 
 
294 aa  213  4.9999999999999996e-54  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  39.35 
 
 
321 aa  212  7e-54  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
295 aa  210  2e-53  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  39.8 
 
 
317 aa  210  3e-53  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  39.8 
 
 
309 aa  207  1e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  39.13 
 
 
299 aa  207  2e-52  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
353 aa  206  3e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
306 aa  206  4e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  36.73 
 
 
310 aa  206  5e-52  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  37.98 
 
 
310 aa  203  3e-51  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  41.03 
 
 
287 aa  203  4e-51  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  38.81 
 
 
301 aa  202  5e-51  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  37.12 
 
 
307 aa  202  5e-51  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  39.04 
 
 
316 aa  202  5e-51  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
307 aa  202  5e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  41.26 
 
 
309 aa  202  8e-51  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  37.8 
 
 
314 aa  201  1.9999999999999998e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  37.63 
 
 
319 aa  200  3e-50  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  37.94 
 
 
313 aa  200  3e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  38.54 
 
 
305 aa  199  3.9999999999999996e-50  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  37.63 
 
 
319 aa  199  7.999999999999999e-50  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
296 aa  198  9e-50  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
316 aa  198  1.0000000000000001e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  39.19 
 
 
320 aa  197  1.0000000000000001e-49  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  37.71 
 
 
296 aa  197  2.0000000000000003e-49  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  37.83 
 
 
308 aa  197  2.0000000000000003e-49  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
299 aa  197  3e-49  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  38.15 
 
 
315 aa  196  4.0000000000000005e-49  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
309 aa  196  6e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
300 aa  196  6e-49  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  38.65 
 
 
288 aa  195  8.000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  39.2 
 
 
316 aa  195  8.000000000000001e-49  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  35.09 
 
 
293 aa  195  1e-48  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  39.43 
 
 
293 aa  194  1e-48  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  39.15 
 
 
307 aa  194  1e-48  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  37.37 
 
 
296 aa  195  1e-48  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  39.43 
 
 
293 aa  194  2e-48  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0513  binding-protein-dependent transport systems inner membrane component  40 
 
 
314 aa  193  4e-48  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
296 aa  193  4e-48  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  37.04 
 
 
296 aa  192  4e-48  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  37.54 
 
 
305 aa  192  5e-48  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  35.06 
 
 
315 aa  192  6e-48  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
293 aa  192  9e-48  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  36.88 
 
 
291 aa  191  1e-47  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
300 aa  191  2e-47  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  40.15 
 
 
310 aa  191  2e-47  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
305 aa  191  2e-47  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  37.98 
 
 
298 aa  191  2e-47  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  37.95 
 
 
305 aa  190  2.9999999999999997e-47  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
307 aa  189  4e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013131  Caci_4985  binding-protein-dependent transport systems inner membrane component  37.32 
 
 
313 aa  189  7e-47  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00226923  hitchhiker  0.00373728 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  40.67 
 
 
306 aa  188  8e-47  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
279 aa  188  9e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  37.27 
 
 
319 aa  188  1e-46  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
295 aa  187  2e-46  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_010571  Oter_4149  binding-protein-dependent transport systems inner membrane component  40.21 
 
 
296 aa  187  2e-46  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00598191  normal  0.10352 
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  37.22 
 
 
322 aa  187  2e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  35.74 
 
 
301 aa  187  3e-46  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  37.87 
 
 
318 aa  187  3e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
324 aa  186  3e-46  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_008048  Sala_0750  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
290 aa  186  4e-46  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
308 aa  186  7e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  43.44 
 
 
310 aa  185  8e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  36.98 
 
 
294 aa  185  8e-46  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  37.83 
 
 
318 aa  185  8e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  36.98 
 
 
294 aa  185  8e-46  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
319 aa  184  2.0000000000000003e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
307 aa  184  2.0000000000000003e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  39.03 
 
 
314 aa  184  2.0000000000000003e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  37.37 
 
 
305 aa  184  3e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
309 aa  183  3e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
417 aa  183  3e-45  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  35 
 
 
316 aa  183  3e-45  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_011370  Rleg2_6091  binding-protein-dependent transport systems inner membrane component  38.11 
 
 
292 aa  183  4.0000000000000006e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
311 aa  183  4.0000000000000006e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013172  Bfae_29440  permease component of ABC-type sugar transporter  36.75 
 
 
318 aa  183  4.0000000000000006e-45  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  34.45 
 
 
313 aa  182  5.0000000000000004e-45  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
318 aa  182  5.0000000000000004e-45  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  38.02 
 
 
291 aa  182  5.0000000000000004e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  34.23 
 
 
306 aa  182  6e-45  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  37.06 
 
 
318 aa  182  6e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
292 aa  182  6e-45  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  36.56 
 
 
310 aa  182  7e-45  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2658  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
300 aa  182  7e-45  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00312349  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
308 aa  181  1e-44  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  38.61 
 
 
305 aa  181  1e-44  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_010003  Pmob_0143  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
402 aa  181  1e-44  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
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