More than 300 homologs were found in PanDaTox collection
for query gene Lcho_3300 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_3300  binding-protein-dependent transport systems inner membrane component  100 
 
 
374 aa  752    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_0231  binding-protein-dependent transport systems inner membrane component  65.99 
 
 
359 aa  454  1.0000000000000001e-126  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  45.35 
 
 
320 aa  272  5.000000000000001e-72  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_009921  Franean1_7038  binding-protein-dependent transport systems inner membrane component  43.13 
 
 
309 aa  246  4e-64  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  51.08 
 
 
314 aa  244  9.999999999999999e-64  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_008781  Pnap_0229  binding-protein-dependent transport systems inner membrane component  39.71 
 
 
312 aa  210  4e-53  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.772545  normal  0.492978 
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
294 aa  196  4.0000000000000005e-49  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  43.78 
 
 
310 aa  193  4e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  41.28 
 
 
293 aa  190  4e-47  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  40 
 
 
299 aa  174  2.9999999999999996e-42  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  36.57 
 
 
308 aa  171  2e-41  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  36 
 
 
295 aa  162  8.000000000000001e-39  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  41.43 
 
 
310 aa  160  4e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  38.14 
 
 
294 aa  159  6e-38  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  38.14 
 
 
294 aa  159  6e-38  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
309 aa  159  9e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
300 aa  159  9e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  32.86 
 
 
289 aa  159  1e-37  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  38.53 
 
 
306 aa  159  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  32.46 
 
 
310 aa  158  2e-37  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_008048  Sala_0750  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
290 aa  157  3e-37  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  40.57 
 
 
309 aa  154  2e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_2714  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
293 aa  154  2.9999999999999998e-36  Marinomonas sp. MWYL1  Bacteria  normal  0.548655  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
293 aa  153  4e-36  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_007516  Syncc9605_1449  lactose transport system permease protein  36.07 
 
 
290 aa  152  8.999999999999999e-36  Synechococcus sp. CC9605  Bacteria  normal  normal  0.0650773 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  36.86 
 
 
293 aa  151  2e-35  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  36.4 
 
 
306 aa  150  3e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
303 aa  149  7e-35  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
319 aa  149  8e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_011769  DvMF_0657  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
297 aa  149  8e-35  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.235569 
 
 
-
 
NC_008820  P9303_15561  putative lactose transporter  37.33 
 
 
302 aa  148  2.0000000000000003e-34  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.334934 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  36.48 
 
 
288 aa  148  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  35.4 
 
 
317 aa  148  2.0000000000000003e-34  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  36.69 
 
 
320 aa  147  3e-34  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  36 
 
 
315 aa  146  5e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  36.29 
 
 
300 aa  146  5e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  34.83 
 
 
310 aa  146  5e-34  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  38.53 
 
 
293 aa  146  6e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  34.83 
 
 
310 aa  146  7.0000000000000006e-34  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
353 aa  146  7.0000000000000006e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  41.13 
 
 
287 aa  145  8.000000000000001e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0223  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
293 aa  145  8.000000000000001e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  35.2 
 
 
314 aa  145  1e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
310 aa  145  1e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  26.7 
 
 
420 aa  145  1e-33  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2266  binding-protein-dependent transport systems inner membrane component  38.24 
 
 
296 aa  145  1e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000392628 
 
 
-
 
NC_010002  Daci_5305  binding-protein-dependent transport systems inner membrane component  36.94 
 
 
298 aa  145  1e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.688973 
 
 
-
 
NC_010003  Pmob_0143  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
402 aa  145  1e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  32.93 
 
 
306 aa  144  2e-33  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
317 aa  145  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
299 aa  144  2e-33  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
318 aa  144  3e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
310 aa  144  3e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2055  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
415 aa  143  4e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  0.33288  normal  0.443347 
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
294 aa  143  5e-33  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
435 aa  143  5e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5709  ABC transporter membrane spanning protein (sugar)  34.76 
 
 
316 aa  143  6e-33  Agrobacterium vitis S4  Bacteria  normal  0.673224  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  33.71 
 
 
310 aa  142  8e-33  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
307 aa  142  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  33.71 
 
 
310 aa  142  9.999999999999999e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  33.71 
 
 
310 aa  142  9.999999999999999e-33  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  33.71 
 
 
310 aa  142  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
319 aa  142  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
305 aa  142  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  27.49 
 
 
299 aa  141  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2658  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
300 aa  141  1.9999999999999998e-32  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00312349  n/a   
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
290 aa  141  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
300 aa  141  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  38.43 
 
 
301 aa  140  3e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  38.01 
 
 
309 aa  140  3e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  34.89 
 
 
321 aa  140  3e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3305  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
300 aa  140  3e-32  Acidovorax sp. JS42  Bacteria  normal  0.980927  normal 
 
 
-
 
NC_012669  Bcav_1523  binding-protein-dependent transport systems inner membrane component  40.68 
 
 
321 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  33.33 
 
 
310 aa  140  3.9999999999999997e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  33.33 
 
 
310 aa  140  3.9999999999999997e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
417 aa  140  4.999999999999999e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  33.33 
 
 
310 aa  140  4.999999999999999e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  33.82 
 
 
307 aa  140  4.999999999999999e-32  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
307 aa  140  4.999999999999999e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  35.61 
 
 
294 aa  139  6e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
310 aa  139  6e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3122  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
305 aa  139  8.999999999999999e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.99861  hitchhiker  0.000381845 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
299 aa  139  8.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_012793  GWCH70_1390  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
308 aa  138  1e-31  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
318 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_009636  Smed_2949  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
302 aa  139  1e-31  Sinorhizobium medicae WSM419  Bacteria  normal  0.261022  normal 
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
305 aa  138  1e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
299 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
304 aa  139  1e-31  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
296 aa  138  1e-31  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
321 aa  138  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
294 aa  137  2e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
300 aa  137  2e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
279 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
300 aa  137  2e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
311 aa  137  2e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  35.43 
 
 
319 aa  137  3.0000000000000003e-31  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_010571  Oter_4149  binding-protein-dependent transport systems inner membrane component  39.68 
 
 
296 aa  137  3.0000000000000003e-31  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00598191  normal  0.10352 
 
 
-
 
NC_011369  Rleg2_1686  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
312 aa  137  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.746865  normal 
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  26.7 
 
 
420 aa  137  3.0000000000000003e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
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