Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3300 |
Symbol | |
ID | 6162211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3667503 |
End bp | 3668627 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641666075 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001792323 |
Protein GI | 171059974 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGA CCCCGACCAT TCCCACGACG ACGCGTGCAC CCGGCGCGGC CAGCGCGCGC CGTGCGGGCC TGCTCATGGT CTCGCCGGCC ATGCTGCTGA TGGGCCTGTT CCTGATCGTG CCCTTCGTGC TCGCGTTCAC GATGTCGTTC ACCAACCAGC GGCTGGTGTC GCCCAATCCG ACCCAGTTCG TCGGCCTGGA GAACTACCGC CAGATGCTCG GCCTGGGCGT GCTGGTGCTC GAACCCGAGA AGGACGCACA AGGCGCCATC GCCCGCGAGG CCGATGGCAG CCCCACCTAT CCGGGCCTGC GCCAGTTCAC CCGCGACAAC CCCGACTACC CGCACCTGGA CCGCAAGCGC GAGTGGTTCC ACCTCGACTG GACCGGCGAC AGCCGCCTCT ACGTGCTGGC CAGCGACGTG ATCTTCATGA AGGCGCTGGT CAACACGGTG CTGTTCGTGG TGGTGGTGGC GCCGGTGCAG GCCCTGCTGG CGCTGCTGCT GGCGATGCTG ATCAACCAGC CGCTGCGCGG CATCAACGTC TTTCGCACCA TCTACTTCAT GCCGGTGGTG ATCTCGATGG TGGTGGTCGC CTTCCTGTGG CGCTTCATCT ATGCCGGCGA CAACGGCCTG CTGAACTCGC TGCTGCAGCA GCTGACCTTC GGCGCCTTCC AGCCGGTCGA CTGGCTGGGC CAGCCCGGCA CCGCACTGTG GGCCATCATG GCGATGTCGG TCTGGCAGGG CGTGGGCTTC CACATGATCG TCTGGCTGTC GGGGCTGCAG ACGATTCCCG CCTCGCTGTA CGAGGCCGCC GCGCTCGAAG GCGCGTCGAA GTGGCAGGTC TTCCGCTACG TCACCTGGCC GGGCCTGCGC AACACCGCGA TCCTGGTGAT GGTCGTCATC ACGATGCAGG CCTTCACGCT CTACCCGCAG ATCGACGTGA TGACGCGCGG CGGCCCGCTC GACTCGACCC AGTCGCTGGT CTTCCAGGCG GTGCAGCGCG GCTACGGCAA GCAGGACATC GCCGGCGGCT CCGCGATCAG CGTCTTCCTG TTCCTGTTCG TGCTGGCGAT CTCGCTGGGC CAACGCTGGC TGACGCGGGA ACGCCAGGTC GACAAGAGCC ACTGA
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Protein sequence | MTQTPTIPTT TRAPGAASAR RAGLLMVSPA MLLMGLFLIV PFVLAFTMSF TNQRLVSPNP TQFVGLENYR QMLGLGVLVL EPEKDAQGAI AREADGSPTY PGLRQFTRDN PDYPHLDRKR EWFHLDWTGD SRLYVLASDV IFMKALVNTV LFVVVVAPVQ ALLALLLAML INQPLRGINV FRTIYFMPVV ISMVVVAFLW RFIYAGDNGL LNSLLQQLTF GAFQPVDWLG QPGTALWAIM AMSVWQGVGF HMIVWLSGLQ TIPASLYEAA ALEGASKWQV FRYVTWPGLR NTAILVMVVI TMQAFTLYPQ IDVMTRGGPL DSTQSLVFQA VQRGYGKQDI AGGSAISVFL FLFVLAISLG QRWLTRERQV DKSH
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