More than 300 homologs were found in PanDaTox collection
for query gene Swoo_2775 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  100 
 
 
238 aa  493  9.999999999999999e-139  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  56.17 
 
 
240 aa  279  3e-74  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  56.6 
 
 
239 aa  276  2e-73  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  50.84 
 
 
240 aa  246  2e-64  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  50.83 
 
 
275 aa  244  9.999999999999999e-64  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  51.85 
 
 
266 aa  242  3e-63  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  240  1e-62  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  51.44 
 
 
266 aa  239  2.9999999999999997e-62  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  51.44 
 
 
266 aa  238  5e-62  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  49.19 
 
 
266 aa  237  1e-61  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  49.19 
 
 
266 aa  236  2e-61  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  47.97 
 
 
266 aa  236  3e-61  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  49.38 
 
 
266 aa  232  4.0000000000000004e-60  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  47.68 
 
 
251 aa  227  1e-58  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  50.21 
 
 
253 aa  224  1e-57  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  46.22 
 
 
241 aa  221  4.9999999999999996e-57  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  47.21 
 
 
238 aa  214  9e-55  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  49.14 
 
 
249 aa  209  2e-53  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  44.3 
 
 
241 aa  207  2e-52  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  46.64 
 
 
239 aa  203  2e-51  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  44.77 
 
 
241 aa  199  3e-50  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  41 
 
 
239 aa  197  1.0000000000000001e-49  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  44.96 
 
 
239 aa  189  2.9999999999999997e-47  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  44.31 
 
 
262 aa  182  4.0000000000000006e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  39.09 
 
 
238 aa  181  7e-45  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  43.09 
 
 
251 aa  181  1e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  40.82 
 
 
264 aa  177  2e-43  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  43.72 
 
 
262 aa  175  5e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  41.84 
 
 
250 aa  174  9.999999999999999e-43  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  38.98 
 
 
245 aa  172  2.9999999999999996e-42  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  44.86 
 
 
250 aa  170  2e-41  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  41.46 
 
 
260 aa  170  2e-41  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  44.86 
 
 
250 aa  168  8e-41  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  43.27 
 
 
260 aa  166  4e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  43.1 
 
 
250 aa  158  8e-38  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1175  short-chain dehydrogenase/reductase SDR  37.9 
 
 
254 aa  157  2e-37  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  39.42 
 
 
249 aa  155  5.0000000000000005e-37  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  39.66 
 
 
259 aa  148  8e-35  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  40.91 
 
 
256 aa  147  2.0000000000000003e-34  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  39.42 
 
 
265 aa  145  5e-34  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  38.94 
 
 
252 aa  145  5e-34  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  38.78 
 
 
277 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  39.5 
 
 
277 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  36.78 
 
 
282 aa  139  3e-32  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  35.77 
 
 
300 aa  138  8.999999999999999e-32  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  35.1 
 
 
256 aa  138  8.999999999999999e-32  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  36.51 
 
 
265 aa  137  2e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  37.55 
 
 
260 aa  135  6.0000000000000005e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  33.89 
 
 
240 aa  134  9e-31  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  35.34 
 
 
257 aa  132  3.9999999999999996e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  36.14 
 
 
260 aa  132  3.9999999999999996e-30  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  35.43 
 
 
255 aa  132  6e-30  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  37.92 
 
 
258 aa  132  6.999999999999999e-30  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  35.74 
 
 
260 aa  131  9e-30  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  37.34 
 
 
251 aa  130  2.0000000000000002e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  37.87 
 
 
264 aa  128  7.000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  35 
 
 
261 aa  126  3e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  35 
 
 
261 aa  126  3e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  36.07 
 
 
263 aa  123  3e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  34.02 
 
 
258 aa  120  1.9999999999999998e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  31.3 
 
 
242 aa  119  3.9999999999999996e-26  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  30.6 
 
 
243 aa  114  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  33.47 
 
 
271 aa  112  3e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  32.65 
 
 
256 aa  112  4.0000000000000004e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  33.2 
 
 
255 aa  112  7.000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  35.59 
 
 
267 aa  111  1.0000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  34.5 
 
 
261 aa  110  2.0000000000000002e-23  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_014230  CA2559_04715  Short-chain dehydrogenase/reductase SDR  34.57 
 
 
249 aa  109  3e-23  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.863639  n/a   
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  32.51 
 
 
267 aa  109  3e-23  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0777  gluconate 5-dehydrogenase  33.51 
 
 
251 aa  109  4.0000000000000004e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.618291  hitchhiker  0.00200145 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  33.19 
 
 
245 aa  108  7.000000000000001e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  33.33 
 
 
254 aa  108  7.000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  33.19 
 
 
245 aa  108  7.000000000000001e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  32.33 
 
 
245 aa  105  4e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  32.65 
 
 
260 aa  105  6e-22  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_010524  Lcho_0185  short chain dehydrogenase  31.3 
 
 
267 aa  105  7e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  32.1 
 
 
270 aa  103  2e-21  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3756  gluconate 5-dehydrogenase  33.51 
 
 
257 aa  103  3e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  103  3e-21  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  32.64 
 
 
262 aa  102  4e-21  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_007404  Tbd_2785  short chain dehydrogenase  28.88 
 
 
254 aa  102  6e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.73728  normal  0.939169 
 
 
-
 
NC_009621  Smed_5798  gluconate 5-dehydrogenase  36.22 
 
 
251 aa  101  9e-21  Sinorhizobium medicae WSM419  Bacteria  normal  0.475551  hitchhiker  0.00243591 
 
 
-
 
NC_013730  Slin_0085  short-chain dehydrogenase/reductase SDR  35.83 
 
 
250 aa  100  1e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  30.45 
 
 
264 aa  101  1e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  32.92 
 
 
261 aa  100  2e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  31.93 
 
 
261 aa  100  2e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  31.4 
 
 
270 aa  99.8  3e-20  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  29.8 
 
 
266 aa  99.8  4e-20  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  32.56 
 
 
264 aa  99  6e-20  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_2828  short-chain dehydrogenase/reductase SDR  32.63 
 
 
250 aa  97.8  1e-19  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  28.5 
 
 
230 aa  96.7  3e-19  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5032  gluconate 5-dehydrogenase  34.41 
 
 
252 aa  96.7  3e-19  Agrobacterium vitis S4  Bacteria  normal  0.930013  n/a   
 
 
-
 
NC_013235  Namu_3917  3-hydroxybutyrate dehydrogenase  34.01 
 
 
260 aa  96.7  3e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  0.283072  normal  0.0412818 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  30.38 
 
 
245 aa  96.3  4e-19  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  30.61 
 
 
257 aa  95.9  5e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
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