More than 300 homologs were found in PanDaTox collection
for query gene Smed_1362 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  100 
 
 
282 aa  569  1e-161  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  68.9 
 
 
277 aa  373  1e-102  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  69.57 
 
 
277 aa  370  1e-101  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  47.67 
 
 
258 aa  223  4e-57  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  47.83 
 
 
254 aa  204  1e-51  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  46.96 
 
 
259 aa  203  2e-51  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  46.37 
 
 
249 aa  202  7e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  43.32 
 
 
265 aa  184  2.0000000000000003e-45  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  42.04 
 
 
256 aa  178  9e-44  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  37.45 
 
 
258 aa  172  6.999999999999999e-42  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  38.52 
 
 
300 aa  169  4e-41  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  39.43 
 
 
260 aa  167  2e-40  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  39.43 
 
 
260 aa  167  2.9999999999999998e-40  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  40.16 
 
 
256 aa  162  7e-39  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  40.4 
 
 
260 aa  152  5e-36  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  39.83 
 
 
257 aa  151  1e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  39.27 
 
 
261 aa  149  4e-35  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  37.7 
 
 
263 aa  149  5e-35  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  39.57 
 
 
264 aa  145  1e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  40.08 
 
 
251 aa  143  2e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  38.31 
 
 
250 aa  144  2e-33  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  36.18 
 
 
260 aa  141  9.999999999999999e-33  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  36.09 
 
 
239 aa  140  1.9999999999999998e-32  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  36.78 
 
 
250 aa  140  3e-32  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  36.78 
 
 
238 aa  139  3.9999999999999997e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  40 
 
 
275 aa  138  8.999999999999999e-32  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  41.56 
 
 
264 aa  137  1e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  35.8 
 
 
250 aa  137  2e-31  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  36.78 
 
 
250 aa  136  5e-31  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  34.32 
 
 
240 aa  134  1.9999999999999998e-30  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  33.6 
 
 
241 aa  130  2.0000000000000002e-29  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  35.02 
 
 
241 aa  131  2.0000000000000002e-29  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  37.86 
 
 
266 aa  128  1.0000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  38.02 
 
 
266 aa  127  2.0000000000000002e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  30.96 
 
 
243 aa  127  2.0000000000000002e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  32.26 
 
 
252 aa  127  2.0000000000000002e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  34.71 
 
 
238 aa  127  2.0000000000000002e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  37.6 
 
 
266 aa  126  4.0000000000000003e-28  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  34.43 
 
 
261 aa  126  5e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  33.87 
 
 
262 aa  125  9e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  33.98 
 
 
266 aa  125  9e-28  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  37.35 
 
 
266 aa  124  1e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  38.02 
 
 
266 aa  124  1e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  34.75 
 
 
239 aa  124  1e-27  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  33.47 
 
 
240 aa  123  3e-27  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  37.85 
 
 
262 aa  123  3e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  35.95 
 
 
238 aa  123  3e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  35.44 
 
 
267 aa  123  4e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  36.84 
 
 
266 aa  122  8e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  37.45 
 
 
262 aa  122  9e-27  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  36.44 
 
 
266 aa  121  9.999999999999999e-27  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  36.99 
 
 
251 aa  121  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  36.68 
 
 
256 aa  120  1.9999999999999998e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  33.61 
 
 
262 aa  120  3e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  36.44 
 
 
266 aa  120  3.9999999999999996e-26  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5235  oxidoreductase protein  30.61 
 
 
275 aa  119  3.9999999999999996e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0780  short-chain dehydrogenase/reductase SDR  37.3 
 
 
251 aa  119  4.9999999999999996e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  33.33 
 
 
260 aa  118  9e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  34.73 
 
 
261 aa  117  9.999999999999999e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  34.73 
 
 
261 aa  117  9.999999999999999e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  34.43 
 
 
240 aa  117  3e-25  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  32.17 
 
 
242 aa  116  3e-25  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  35.54 
 
 
239 aa  116  3e-25  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  29.05 
 
 
245 aa  115  1.0000000000000001e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  35.8 
 
 
239 aa  114  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  37.25 
 
 
249 aa  114  2.0000000000000002e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  36.55 
 
 
253 aa  114  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  29.79 
 
 
245 aa  113  3e-24  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  33.33 
 
 
264 aa  113  3e-24  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_007347  Reut_A0130  short chain dehydrogenase  31.11 
 
 
265 aa  113  4.0000000000000004e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.727225  n/a   
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  32.79 
 
 
241 aa  113  4.0000000000000004e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  32.51 
 
 
251 aa  112  6e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_013743  Htur_2906  short-chain dehydrogenase/reductase SDR  34.13 
 
 
258 aa  112  6e-24  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  31.67 
 
 
265 aa  112  9e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3871  Short-chain dehydrogenase/reductase SDR  36.89 
 
 
263 aa  110  2.0000000000000002e-23  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  33.2 
 
 
270 aa  110  4.0000000000000004e-23  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  33.07 
 
 
255 aa  110  4.0000000000000004e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4895  short chain dehydrogenase  31.97 
 
 
258 aa  109  5e-23  Polaromonas sp. JS666  Bacteria  hitchhiker  0.000739396  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  29.46 
 
 
245 aa  109  6e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  29.46 
 
 
245 aa  109  6e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  32.58 
 
 
260 aa  108  9.000000000000001e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  35.63 
 
 
267 aa  107  2e-22  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_008825  Mpe_A3806  short chain dehydrogenase  32.41 
 
 
260 aa  107  3e-22  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.187681 
 
 
-
 
NC_013744  Htur_3779  short-chain dehydrogenase/reductase SDR  33.87 
 
 
266 aa  107  3e-22  Haloterrigena turkmenica DSM 5511  Archaea  hitchhiker  0.00111461  n/a   
 
 
-
 
NC_011885  Cyan7425_0107  short-chain dehydrogenase/reductase SDR  34.22 
 
 
258 aa  106  4e-22  Cyanothece sp. PCC 7425  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_5291  short chain dehydrogenase  30.92 
 
 
260 aa  106  4e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  32.68 
 
 
270 aa  106  4e-22  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2371  3-oxoacyl-(acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDR  36.89 
 
 
248 aa  105  7e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  30.67 
 
 
255 aa  105  8e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  30.1 
 
 
230 aa  105  9e-22  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_1055  short-chain dehydrogenase/reductase SDR  32.69 
 
 
258 aa  105  1e-21  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009051  Memar_0925  3-ketoacyl-(acyl-carrier-protein) reductase  38.34 
 
 
251 aa  104  1e-21  Methanoculleus marisnigri JR1  Archaea  normal  0.568448  n/a   
 
 
-
 
NC_008060  Bcen_0297  short-chain dehydrogenase/reductase SDR  42.41 
 
 
236 aa  104  1e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.450899  n/a   
 
 
-
 
NC_009049  Rsph17029_1031  short-chain dehydrogenase/reductase SDR  36.41 
 
 
248 aa  104  2e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.961994  normal  0.547574 
 
 
-
 
NC_007509  Bcep18194_C7039  Short-chain dehydrogenase/reductase SDR  36.04 
 
 
258 aa  104  2e-21  Burkholderia sp. 383  Bacteria  normal  normal  0.607221 
 
 
-
 
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