Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1329 |
Symbol | |
ID | 4172793 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1594909 |
End bp | 1595625 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054336 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_660909 |
Protein GI | 109897654 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.371699 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGTA TACTGATTAC CGGCGCCACG TCAGGAATAG GCGAAGCCTT AGTAAAGCAC GCCGCCCAAA GTGGATATGA CGTTATAGCC TGTGGCAGAA ATGCCGATAA ACTAAAAACA TTTGAGGGCG TTCCGGCTGT GACCACATTA CAATTTGATG TCACTAACCG GCAGCAAACG AAGCTCAAAT TAGAGGCGAT CAGCGCCGAC ATTTATGTGT TAAATGCGGG GGTATGTGAA TACGTCGAAT TAGATTCATT CGACCCAGAT ATGTTTAAAC GTGTATTCGA AGCCAATTTT TTTGGCGTTG TCCACTGTAT TGATGCCCTG CTTCCAAAGT TAAGCACTGG CTCACAACTT GTACTAGTAG ACAGTATGGC CAGATTCCTG CCGTTTACTC AAAGTCAGGC ATATGGTGCC AGTAAAGCGG CACTGCATTA TTTGACTAAA ACCATGGAAG TGGATTTAGC GGACAAAGGC GTTGTCGTGC AAAGTATCTC CCCCGGCTTT GTAGAAACCC CGTTAACAGA CAAGAATGAC TTTGATATGC CGATGAAGAT TTCCGTACAT GAAGCAGCAA AAAGCTTGCT AAAAGGCATA GAGCGTCAAT CTGCCAGTGT CTATTTCCCC ACGATGTTCG GTTTATTACT GCGTTTTCTT TCCCGCTTAC CAAGCTCACT GAAAGTCGCC TTAAGCAAAA AAATGAAAAA TAATTAA
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Protein sequence | MKRILITGAT SGIGEALVKH AAQSGYDVIA CGRNADKLKT FEGVPAVTTL QFDVTNRQQT KLKLEAISAD IYVLNAGVCE YVELDSFDPD MFKRVFEANF FGVVHCIDAL LPKLSTGSQL VLVDSMARFL PFTQSQAYGA SKAALHYLTK TMEVDLADKG VVVQSISPGF VETPLTDKND FDMPMKISVH EAAKSLLKGI ERQSASVYFP TMFGLLLRFL SRLPSSLKVA LSKKMKNN
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