Gene Patl_1329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1329 
Symbol 
ID4172793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1594909 
End bp1595625 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content44% 
IMG OID638054336 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_660909 
Protein GI109897654 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.371699 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTA TACTGATTAC CGGCGCCACG TCAGGAATAG GCGAAGCCTT AGTAAAGCAC 
GCCGCCCAAA GTGGATATGA CGTTATAGCC TGTGGCAGAA ATGCCGATAA ACTAAAAACA
TTTGAGGGCG TTCCGGCTGT GACCACATTA CAATTTGATG TCACTAACCG GCAGCAAACG
AAGCTCAAAT TAGAGGCGAT CAGCGCCGAC ATTTATGTGT TAAATGCGGG GGTATGTGAA
TACGTCGAAT TAGATTCATT CGACCCAGAT ATGTTTAAAC GTGTATTCGA AGCCAATTTT
TTTGGCGTTG TCCACTGTAT TGATGCCCTG CTTCCAAAGT TAAGCACTGG CTCACAACTT
GTACTAGTAG ACAGTATGGC CAGATTCCTG CCGTTTACTC AAAGTCAGGC ATATGGTGCC
AGTAAAGCGG CACTGCATTA TTTGACTAAA ACCATGGAAG TGGATTTAGC GGACAAAGGC
GTTGTCGTGC AAAGTATCTC CCCCGGCTTT GTAGAAACCC CGTTAACAGA CAAGAATGAC
TTTGATATGC CGATGAAGAT TTCCGTACAT GAAGCAGCAA AAAGCTTGCT AAAAGGCATA
GAGCGTCAAT CTGCCAGTGT CTATTTCCCC ACGATGTTCG GTTTATTACT GCGTTTTCTT
TCCCGCTTAC CAAGCTCACT GAAAGTCGCC TTAAGCAAAA AAATGAAAAA TAATTAA
 
Protein sequence
MKRILITGAT SGIGEALVKH AAQSGYDVIA CGRNADKLKT FEGVPAVTTL QFDVTNRQQT 
KLKLEAISAD IYVLNAGVCE YVELDSFDPD MFKRVFEANF FGVVHCIDAL LPKLSTGSQL
VLVDSMARFL PFTQSQAYGA SKAALHYLTK TMEVDLADKG VVVQSISPGF VETPLTDKND
FDMPMKISVH EAAKSLLKGI ERQSASVYFP TMFGLLLRFL SRLPSSLKVA LSKKMKNN