More than 300 homologs were found in PanDaTox collection
for query gene SO_3382 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  100 
 
 
266 aa  545  1e-154  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  77.44 
 
 
266 aa  431  1e-120  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  77.44 
 
 
266 aa  428  1e-119  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  77.07 
 
 
266 aa  429  1e-119  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  75.29 
 
 
266 aa  411  1e-114  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  72.9 
 
 
266 aa  407  1.0000000000000001e-112  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  74.12 
 
 
266 aa  403  1e-111  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  72.52 
 
 
266 aa  402  1e-111  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  72.18 
 
 
275 aa  384  1e-105  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  62.92 
 
 
249 aa  285  4e-76  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  55.27 
 
 
240 aa  248  6e-65  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  51.19 
 
 
253 aa  242  3.9999999999999997e-63  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  49.19 
 
 
238 aa  237  2e-61  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  48 
 
 
251 aa  234  8e-61  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  48.15 
 
 
240 aa  220  9.999999999999999e-57  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  45.34 
 
 
239 aa  211  1e-53  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  45.93 
 
 
264 aa  200  1.9999999999999998e-50  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  44.94 
 
 
241 aa  199  3.9999999999999996e-50  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  47.13 
 
 
238 aa  199  5e-50  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  45.08 
 
 
239 aa  199  5e-50  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  44.3 
 
 
238 aa  195  8.000000000000001e-49  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  45.76 
 
 
260 aa  189  5e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  43.27 
 
 
241 aa  187  2e-46  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  45.08 
 
 
239 aa  186  3e-46  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  44.12 
 
 
262 aa  185  7e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  40.41 
 
 
245 aa  185  8e-46  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  43.21 
 
 
241 aa  182  4.0000000000000006e-45  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  43.08 
 
 
260 aa  182  6e-45  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  38.68 
 
 
239 aa  180  2e-44  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  44.58 
 
 
262 aa  176  3e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  40.59 
 
 
251 aa  171  1e-41  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  42.57 
 
 
250 aa  171  2e-41  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_009524  PsycPRwf_1175  short-chain dehydrogenase/reductase SDR  40.24 
 
 
254 aa  162  5.0000000000000005e-39  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  39.45 
 
 
252 aa  161  9e-39  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  43.03 
 
 
250 aa  159  6e-38  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  42.21 
 
 
250 aa  156  3e-37  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  41.56 
 
 
250 aa  145  9e-34  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  36.14 
 
 
265 aa  135  5e-31  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  36.33 
 
 
249 aa  134  1.9999999999999998e-30  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  37.55 
 
 
260 aa  131  1.0000000000000001e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  35.63 
 
 
258 aa  128  1.0000000000000001e-28  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  36.03 
 
 
257 aa  128  1.0000000000000001e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  34.29 
 
 
265 aa  127  1.0000000000000001e-28  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  36.89 
 
 
259 aa  127  3e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  37.35 
 
 
282 aa  124  1e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  37.6 
 
 
260 aa  124  1e-27  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  37.6 
 
 
260 aa  124  2e-27  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  36.89 
 
 
251 aa  122  4e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  38.42 
 
 
300 aa  122  5e-27  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  34.54 
 
 
261 aa  120  1.9999999999999998e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  34.54 
 
 
261 aa  120  1.9999999999999998e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  34.68 
 
 
277 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  36.55 
 
 
261 aa  115  6.9999999999999995e-25  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  34.13 
 
 
256 aa  114  1.0000000000000001e-24  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  33.77 
 
 
256 aa  114  1.0000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  34.65 
 
 
277 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  35.18 
 
 
258 aa  114  2.0000000000000002e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  37.75 
 
 
264 aa  106  4e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  31.68 
 
 
256 aa  103  2e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  31.05 
 
 
260 aa  102  6e-21  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  30.24 
 
 
242 aa  102  7e-21  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  32.21 
 
 
263 aa  102  8e-21  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  33.33 
 
 
267 aa  99.8  5e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  30.98 
 
 
255 aa  98.6  9e-20  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  29.96 
 
 
254 aa  95.9  6e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_010581  Bind_1276  short chain dehydrogenase  32 
 
 
245 aa  95.1  9e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.127244 
 
 
-
 
NC_013132  Cpin_4835  short-chain dehydrogenase/reductase SDR  32.21 
 
 
273 aa  94.7  1e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000000227026 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  30.89 
 
 
261 aa  94  2e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  30.89 
 
 
255 aa  93.6  3e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  31.47 
 
 
264 aa  93.6  3e-18  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_007951  Bxe_A1732  putative short-chain dehydrogenase/reductase SDR  31.75 
 
 
257 aa  93.2  3e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_5291  short chain dehydrogenase  30.2 
 
 
260 aa  93.6  3e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4152  short-chain dehydrogenase/reductase SDR  35.18 
 
 
257 aa  93.2  4e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4345  short-chain dehydrogenase/reductase SDR  32.84 
 
 
253 aa  92  8e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.120533  normal 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  27.8 
 
 
243 aa  91.3  1e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3645  short-chain dehydrogenase/reductase SDR  35.03 
 
 
268 aa  92  1e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  32.63 
 
 
270 aa  92  1e-17  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  28.74 
 
 
271 aa  91.3  2e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  32.68 
 
 
267 aa  90.9  2e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_007511  Bcep18194_B1738  short chain dehydrogenase  35.08 
 
 
278 aa  90.9  2e-17  Burkholderia sp. 383  Bacteria  normal  0.0147369  normal 
 
 
-
 
NC_010681  Bphyt_2637  short chain dehydrogenase  32.98 
 
 
249 aa  90.1  3e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.880192  normal  0.691513 
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  28.97 
 
 
240 aa  90.1  4e-17  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  33.05 
 
 
270 aa  89.7  4e-17  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1756  short-chain dehydrogenase/reductase SDR  33.33 
 
 
256 aa  89.7  5e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4065  oxidoreductase, short-chain dehydrogenase/reductase family  35.47 
 
 
252 aa  89  8e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.372477  n/a   
 
 
-
 
NC_012857  Rpic12D_4111  short chain dehydrogenase  31.38 
 
 
253 aa  89  8e-17  Ralstonia pickettii 12D  Bacteria  normal  normal  0.173439 
 
 
-
 
NC_010678  Rpic_3998  short chain dehydrogenase  31.38 
 
 
253 aa  89  8e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  29.05 
 
 
245 aa  88.6  9e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  29.05 
 
 
245 aa  88.6  9e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_013132  Cpin_2654  short-chain dehydrogenase/reductase SDR  31.79 
 
 
265 aa  88.2  1e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  28.63 
 
 
245 aa  88.2  1e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007519  Dde_1841  short chain dehydrogenase/reductase family oxidoreductase  30.69 
 
 
250 aa  87.4  2e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_007951  Bxe_A4248  short chain dehydrogenase  30.65 
 
 
259 aa  87.4  2e-16  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.215124 
 
 
-
 
NC_010681  Bphyt_0470  short chain dehydrogenase  30.77 
 
 
259 aa  87.8  2e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  33.85 
 
 
264 aa  86.7  4e-16  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_010725  Mpop_1521  short-chain dehydrogenase/reductase SDR  34.52 
 
 
261 aa  86.3  5e-16  Methylobacterium populi BJ001  Bacteria  normal  normal  0.556308 
 
 
-
 
NC_009485  BBta_4730  putative short-chain dehydrogenases/reductases (SDR) family protein  34.59 
 
 
260 aa  86.3  5e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0479  short-chain dehydrogenase/reductase SDR  31.94 
 
 
268 aa  85.9  6e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0780  short-chain dehydrogenase/reductase SDR  30.52 
 
 
251 aa  85.9  6e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2326  short-chain dehydrogenase/reductase SDR  31.28 
 
 
246 aa  84.7  0.000000000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
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