More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0408 on replicon NC_008044
Organism: Ruegeria sp. TM1040



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  100 
 
 
240 aa  493  1e-139  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  53.51 
 
 
243 aa  243  1.9999999999999999e-63  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  46.86 
 
 
245 aa  215  5e-55  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  46.86 
 
 
245 aa  215  5e-55  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  47.28 
 
 
245 aa  214  9.999999999999999e-55  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  43.86 
 
 
245 aa  192  4e-48  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  39.83 
 
 
257 aa  177  1e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  37.71 
 
 
258 aa  177  2e-43  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  37.13 
 
 
256 aa  166  2e-40  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  41.38 
 
 
260 aa  163  2.0000000000000002e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  38.98 
 
 
249 aa  161  9e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  36.57 
 
 
300 aa  159  4e-38  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  36.73 
 
 
260 aa  157  1e-37  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  41.95 
 
 
251 aa  157  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  38.72 
 
 
263 aa  157  2e-37  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  37.14 
 
 
260 aa  157  2e-37  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  35.62 
 
 
261 aa  150  2e-35  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  36.78 
 
 
259 aa  147  1.0000000000000001e-34  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  38.1 
 
 
264 aa  145  4.0000000000000006e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  38.6 
 
 
256 aa  142  4e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  36.21 
 
 
258 aa  138  8.999999999999999e-32  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  33.89 
 
 
238 aa  138  1e-31  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  35.04 
 
 
239 aa  137  1e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  34.32 
 
 
282 aa  136  2e-31  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  37.12 
 
 
265 aa  135  6.0000000000000005e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  34.5 
 
 
250 aa  131  7.999999999999999e-30  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  32.64 
 
 
264 aa  131  7.999999999999999e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  34.48 
 
 
277 aa  131  9e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  33.19 
 
 
254 aa  131  1.0000000000000001e-29  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  37.77 
 
 
251 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  33.48 
 
 
238 aa  130  2.0000000000000002e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  33.19 
 
 
277 aa  129  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  33.62 
 
 
250 aa  124  1e-27  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  35.06 
 
 
241 aa  124  1e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  35.17 
 
 
250 aa  123  2e-27  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  30.21 
 
 
242 aa  122  4e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  34.35 
 
 
260 aa  120  1.9999999999999998e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  36.78 
 
 
256 aa  119  3e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  33.47 
 
 
241 aa  120  3e-26  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  32.64 
 
 
260 aa  119  3.9999999999999996e-26  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  34.58 
 
 
249 aa  119  4.9999999999999996e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  33.74 
 
 
265 aa  118  9e-26  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  33.62 
 
 
239 aa  117  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  32.87 
 
 
252 aa  117  9.999999999999999e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  31.06 
 
 
238 aa  117  9.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  33.62 
 
 
250 aa  117  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  34.76 
 
 
262 aa  115  5e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  32.14 
 
 
240 aa  114  1.0000000000000001e-24  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  32.77 
 
 
239 aa  114  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  33.61 
 
 
267 aa  113  2.0000000000000002e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  32.62 
 
 
239 aa  112  4.0000000000000004e-24  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  35.42 
 
 
266 aa  112  4.0000000000000004e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_013739  Cwoe_3253  short-chain dehydrogenase/reductase SDR  32.89 
 
 
264 aa  110  3e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.200417  normal  0.189117 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  35.29 
 
 
261 aa  108  1e-22  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0943  Short-chain dehydrogenase/reductase SDR  27.34 
 
 
293 aa  107  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6402  short-chain dehydrogenase/reductase SDR  35.26 
 
 
277 aa  107  2e-22  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000182624  normal 
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  32.07 
 
 
241 aa  106  4e-22  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  32.48 
 
 
262 aa  105  5e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3908  short-chain dehydrogenase/reductase SDR  35.27 
 
 
272 aa  104  1e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.106718  normal  0.186536 
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  2e-21  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_009338  Mflv_0217  short chain dehydrogenase  33.2 
 
 
286 aa  103  2e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.743608  normal 
 
 
-
 
NC_008392  Bamb_5739  short-chain dehydrogenase/reductase SDR  35.52 
 
 
282 aa  103  2e-21  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.749773 
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  34.04 
 
 
262 aa  103  3e-21  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6492  short-chain dehydrogenase/reductase SDR  35.52 
 
 
282 aa  103  3e-21  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3968  short chain dehydrogenase  34.11 
 
 
269 aa  103  4e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0231224  normal  0.018096 
 
 
-
 
NC_007413  Ava_2888  Short-chain dehydrogenase/reductase SDR  34.84 
 
 
257 aa  102  5e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0119499 
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  30.21 
 
 
230 aa  102  6e-21  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1374  short-chain dehydrogenase/reductase SDR  34.74 
 
 
253 aa  102  7e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  0.542817  normal  0.89387 
 
 
-
 
NC_014248  Aazo_3599  short-chain dehydrogenase/reductase SDR  35.23 
 
 
256 aa  101  8e-21  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1352  short-chain dehydrogenase/reductase SDR  35.74 
 
 
272 aa  101  1e-20  Roseiflexus sp. RS-1  Bacteria  normal  0.15703  normal 
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  31.82 
 
 
257 aa  101  1e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  33.47 
 
 
264 aa  101  1e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  32.24 
 
 
271 aa  100  2e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  30.17 
 
 
264 aa  100  2e-20  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  31.67 
 
 
270 aa  99.8  3e-20  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_5037  3-ketoacyl-(acyl-carrier-protein) reductase  32.29 
 
 
238 aa  100  3e-20  Flavobacterium johnsoniae UW101  Bacteria  normal  0.293143  n/a   
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  28.78 
 
 
231 aa  99.4  4e-20  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  29.87 
 
 
240 aa  99.8  4e-20  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  28.78 
 
 
231 aa  99.4  4e-20  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  29.26 
 
 
245 aa  99.4  4e-20  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  31.67 
 
 
270 aa  99.4  5e-20  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0395  short-chain dehydrogenase/reductase SDR  26.87 
 
 
275 aa  99.4  5e-20  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3312  short-chain dehydrogenase/reductase SDR  31.56 
 
 
260 aa  98.6  8e-20  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1067  short-chain dehydrogenase/reductase SDR  34 
 
 
258 aa  98.6  9e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2231  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Shigella boydii CDC 3083-94  Bacteria  unclonable  0.00000000000000399569  n/a   
 
 
-
 
CP001637  EcDH1_2554  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Escherichia coli DH1  Bacteria  unclonable  9.3114e-16  n/a   
 
 
-
 
NC_013757  Gobs_4610  short-chain dehydrogenase/reductase SDR  34.15 
 
 
261 aa  97.8  1e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1472  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  unclonable  0.00000000346671  hitchhiker  0.00000000000000508287 
 
 
-
 
NC_010468  EcolC_2508  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Escherichia coli ATCC 8739  Bacteria  unclonable  0.0000000339194  hitchhiker  0.00000190522 
 
 
-
 
NC_013061  Phep_0379  short-chain dehydrogenase/reductase SDR  30 
 
 
262 aa  97.8  1e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0488  short-chain dehydrogenase/reductase SDR  28.91 
 
 
261 aa  98.2  1e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  33.06 
 
 
267 aa  97.8  1e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_010498  EcSMS35_2034  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Escherichia coli SMS-3-5  Bacteria  unclonable  0.000000000773418  decreased coverage  0.000000561813 
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  31.2 
 
 
259 aa  98.2  1e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_009800  EcHS_A1215  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
244 aa  97.8  1e-19  Escherichia coli HS  Bacteria  unclonable  7.480399999999999e-22  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>