More than 300 homologs were found in PanDaTox collection
for query gene Apar_0041 on replicon NC_013203
Organism: Atopobium parvulum DSM 20469



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  100 
 
 
257 aa  527  1e-149  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  59.84 
 
 
258 aa  294  1e-78  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  46.03 
 
 
264 aa  223  2e-57  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  47.51 
 
 
256 aa  212  5.999999999999999e-54  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  42.23 
 
 
263 aa  207  2e-52  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  41.04 
 
 
267 aa  206  4e-52  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  43.19 
 
 
262 aa  203  2e-51  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  42.75 
 
 
263 aa  199  3.9999999999999996e-50  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  43.64 
 
 
259 aa  192  6e-48  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  41.08 
 
 
289 aa  190  2e-47  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  39.68 
 
 
260 aa  185  8e-46  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  41.56 
 
 
258 aa  184  1.0000000000000001e-45  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  37.98 
 
 
257 aa  183  2.0000000000000003e-45  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  38.37 
 
 
257 aa  180  2e-44  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  41.11 
 
 
262 aa  180  2e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  45.41 
 
 
260 aa  179  2.9999999999999997e-44  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  41.22 
 
 
261 aa  179  2.9999999999999997e-44  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  40.82 
 
 
261 aa  177  2e-43  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  40.82 
 
 
264 aa  176  3e-43  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  45.08 
 
 
264 aa  175  5e-43  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  35.97 
 
 
261 aa  174  9.999999999999999e-43  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  39.75 
 
 
265 aa  173  1.9999999999999998e-42  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  39.91 
 
 
344 aa  172  3.9999999999999995e-42  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  41.13 
 
 
298 aa  172  5.999999999999999e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  33.33 
 
 
259 aa  169  3e-41  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  37.74 
 
 
266 aa  169  4e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  37.84 
 
 
259 aa  169  5e-41  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  39.3 
 
 
258 aa  168  9e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  39.73 
 
 
360 aa  166  2.9999999999999998e-40  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  44.16 
 
 
264 aa  166  2.9999999999999998e-40  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  40 
 
 
259 aa  166  2.9999999999999998e-40  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  39.3 
 
 
258 aa  166  4e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  37.35 
 
 
266 aa  166  4e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  32.94 
 
 
259 aa  165  5e-40  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  37.4 
 
 
259 aa  163  3e-39  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  39.34 
 
 
343 aa  161  1e-38  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  34.65 
 
 
264 aa  160  2e-38  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  38.16 
 
 
257 aa  159  3e-38  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  38.78 
 
 
263 aa  157  1e-37  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  39.52 
 
 
291 aa  157  2e-37  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  36.22 
 
 
275 aa  156  3e-37  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  38.13 
 
 
262 aa  156  3e-37  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  34.51 
 
 
260 aa  156  3e-37  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  40.74 
 
 
256 aa  152  7e-36  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  38.11 
 
 
262 aa  151  8.999999999999999e-36  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  37.19 
 
 
267 aa  150  2e-35  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
BN001305  ANIA_08398  conserved hypothetical protein  38.12 
 
 
364 aa  149  4e-35  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  38.65 
 
 
276 aa  149  5e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  38.11 
 
 
275 aa  149  6e-35  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  35.8 
 
 
257 aa  148  8e-35  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  38.87 
 
 
262 aa  148  9e-35  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  38.87 
 
 
262 aa  148  9e-35  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  38.68 
 
 
263 aa  147  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  39.53 
 
 
269 aa  147  1.0000000000000001e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  39.27 
 
 
262 aa  147  1.0000000000000001e-34  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_011666  Msil_1841  short-chain dehydrogenase/reductase SDR  38.74 
 
 
266 aa  147  2.0000000000000003e-34  Methylocella silvestris BL2  Bacteria  n/a    normal  0.197421 
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  37.45 
 
 
259 aa  145  8.000000000000001e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  39.46 
 
 
257 aa  144  1e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  33.99 
 
 
258 aa  144  1e-33  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  36.58 
 
 
277 aa  144  1e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  42.86 
 
 
265 aa  144  1e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  39.92 
 
 
260 aa  143  2e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  37.04 
 
 
259 aa  143  3e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  37.64 
 
 
261 aa  142  5e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0310  short-chain dehydrogenase/reductase SDR  36.92 
 
 
284 aa  142  6e-33  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  33.85 
 
 
269 aa  142  7e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  32 
 
 
255 aa  141  9e-33  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  38.27 
 
 
258 aa  141  9.999999999999999e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_010581  Bind_3244  short-chain dehydrogenase/reductase SDR  38.27 
 
 
262 aa  141  9.999999999999999e-33  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.68 
 
 
259 aa  141  9.999999999999999e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  35.39 
 
 
259 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  36.63 
 
 
259 aa  140  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  38 
 
 
258 aa  140  1.9999999999999998e-32  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  37.85 
 
 
258 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  37.6 
 
 
258 aa  140  3e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  37.6 
 
 
258 aa  140  3e-32  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  33.2 
 
 
267 aa  139  3.9999999999999997e-32  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  37.4 
 
 
253 aa  139  3.9999999999999997e-32  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  38.34 
 
 
262 aa  139  6e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  37.35 
 
 
267 aa  139  6e-32  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_008262  CPR_0344  3-oxoacyl-[acyl-carrier protein] reductase  31.76 
 
 
265 aa  138  7.999999999999999e-32  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  35.18 
 
 
273 aa  137  2e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  31.52 
 
 
265 aa  137  2e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  36.22 
 
 
259 aa  137  2e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  37.9 
 
 
267 aa  137  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  36.18 
 
 
267 aa  136  3.0000000000000003e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  38.17 
 
 
253 aa  136  3.0000000000000003e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  36.18 
 
 
267 aa  136  3.0000000000000003e-31  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  37.85 
 
 
258 aa  136  3.0000000000000003e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_010501  PputW619_4774  short-chain dehydrogenase/reductase SDR  35.02 
 
 
260 aa  136  4e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.45506 
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  34.98 
 
 
259 aa  136  4e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  37.05 
 
 
272 aa  135  5e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  33.46 
 
 
261 aa  135  6.0000000000000005e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  37.74 
 
 
255 aa  135  7.000000000000001e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0459  short-chain dehydrogenase/reductase SDR  35.41 
 
 
260 aa  135  8e-31  Pseudomonas putida GB-1  Bacteria  normal  normal  0.240703 
 
 
-
 
NC_002947  PP_0429  short chain dehydrogenase/reductase family oxidoreductase  35.41 
 
 
260 aa  134  9.999999999999999e-31  Pseudomonas putida KT2440  Bacteria  normal  normal  0.406504 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  36.36 
 
 
261 aa  134  9.999999999999999e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0462  short-chain dehydrogenase/reductase SDR  35.41 
 
 
260 aa  134  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  normal  0.767614  hitchhiker  0.00534124 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  36.76 
 
 
252 aa  134  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  39.39 
 
 
271 aa  133  3e-30  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
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