More than 300 homologs were found in PanDaTox collection
for query gene Swit_4897 on replicon NC_009508
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009508  Swit_4897  ring hydroxylating dioxygenase, alpha subunit  100 
 
 
435 aa  911    Sphingomonas wittichii RW1  Bacteria  normal  0.227325  normal  0.4666 
 
 
-
 
NC_009512  Pput_2881  ring hydroxylating dioxygenase, alpha subunit  43.09 
 
 
450 aa  331  2e-89  Pseudomonas putida F1  Bacteria  normal  0.912394  normal  0.0432092 
 
 
-
 
NC_008757  Pnap_4152  ring hydroxylating dioxygenase, alpha subunit  41.61 
 
 
456 aa  325  7e-88  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.424226  normal  0.388878 
 
 
-
 
NC_007953  Bxe_C1197  biphenyl 2,3-dioxygenase alpha subunit (BphA1)  40.27 
 
 
459 aa  322  9.000000000000001e-87  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02430  3-phenylpropionate dioxygenase, large (alpha) subunit  39.78 
 
 
453 aa  310  5e-83  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1130  Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  39.78 
 
 
453 aa  310  5e-83  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1139  aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  39.78 
 
 
453 aa  310  5e-83  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2691  3-phenylpropionate dioxygenase alpha subunit  39.78 
 
 
453 aa  310  5e-83  Escherichia coli SMS-3-5  Bacteria  normal  0.244955  normal 
 
 
-
 
NC_012892  B21_02394  hypothetical protein  39.78 
 
 
453 aa  310  5e-83  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2690  3-phenylpropionate dioxygenase alpha subunit  39.55 
 
 
453 aa  308  2.0000000000000002e-82  Escherichia coli HS  Bacteria  normal  0.163483  n/a   
 
 
-
 
NC_008726  Mvan_4415  ring hydroxylating dioxygenase, alpha subunit  38.43 
 
 
446 aa  298  1e-79  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.415837  normal 
 
 
-
 
NC_009426  Saro_3842  ring hydroxylating dioxygenase, alpha subunit  38.48 
 
 
455 aa  292  1e-77  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_42190  aromatic ring hydroxylating dioxygenase, alpha subunit  38.71 
 
 
448 aa  290  5.0000000000000004e-77  Azotobacter vinelandii DJ  Bacteria  normal  0.0579776  n/a   
 
 
-
 
NC_013739  Cwoe_0435  Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  38.6 
 
 
427 aa  288  1e-76  Conexibacter woesei DSM 14684  Bacteria  normal  decreased coverage  0.00493775 
 
 
-
 
NC_009426  Saro_3901  ring hydroxylating dioxygenase, alpha subunit  39.34 
 
 
459 aa  284  3.0000000000000004e-75  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.682799  n/a   
 
 
-
 
NC_009426  Saro_3840  ring hydroxylating dioxygenase, alpha subunit  36.59 
 
 
450 aa  276  4e-73  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0890  ring hydroxylating dioxygenase, alpha subunit  36.19 
 
 
497 aa  275  1.0000000000000001e-72  Sphingomonas wittichii RW1  Bacteria  normal  0.145074  normal  0.391683 
 
 
-
 
NC_007298  Daro_3246  ring hydroxylating dioxygenase, alpha subunit:Rieske (2Fe-2S) region  37.67 
 
 
456 aa  271  1e-71  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000178778  normal 
 
 
-
 
NC_009338  Mflv_0626  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1709  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium sp. KMS  Bacteria  normal  0.211814  normal  0.573213 
 
 
-
 
NC_009338  Mflv_0544  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1653  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0539  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0984806  normal 
 
 
-
 
NC_008146  Mmcs_1680  Rieske (2Fe-2S) region  36.89 
 
 
438 aa  238  2e-61  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008703  Mkms_5610  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  238  2e-61  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008147  Mmcs_5441  Rieske (2Fe-2S) region  36.89 
 
 
438 aa  236  6e-61  Mycobacterium sp. MCS  Bacteria  normal  0.0352555  normal  0.90702 
 
 
-
 
NC_008704  Mkms_5838  Rieske (2Fe-2S) domain-containing protein  36.89 
 
 
438 aa  236  6e-61  Mycobacterium sp. KMS  Bacteria  normal  0.1481  normal 
 
 
-
 
NC_008781  Pnap_2485  ring hydroxylating dioxygenase, alpha subunit  36.63 
 
 
447 aa  233  4.0000000000000004e-60  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0662  ring hydroxylating dioxygenase, alpha subunit  32.89 
 
 
455 aa  223  4.9999999999999996e-57  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2237  ring hydroxylating dioxygenase, alpha subunit  32.89 
 
 
458 aa  223  8e-57  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0567  ring hydroxylating dioxygenase, alpha subunit  32.89 
 
 
458 aa  223  8e-57  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0488  ring hydroxylating dioxygenase, alpha subunit  32.89 
 
 
455 aa  222  9.999999999999999e-57  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1617  ring hydroxylating dioxygenase, alpha subunit  32.66 
 
 
455 aa  221  1.9999999999999999e-56  Mycobacterium sp. JLS  Bacteria  normal  0.541424  normal 
 
 
-
 
NC_008146  Mmcs_1642  ring hydroxylating dioxygenase, alpha subunit  32.66 
 
 
455 aa  221  1.9999999999999999e-56  Mycobacterium sp. MCS  Bacteria  normal  0.973879  n/a   
 
 
-
 
NC_008705  Mkms_1668  ring hydroxylating dioxygenase, alpha subunit  32.66 
 
 
455 aa  221  1.9999999999999999e-56  Mycobacterium sp. KMS  Bacteria  normal  0.779225  normal 
 
 
-
 
NC_008703  Mkms_5626  ring hydroxylating dioxygenase, alpha subunit  32.66 
 
 
458 aa  221  1.9999999999999999e-56  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3092  ring hydroxylating dioxygenase, alpha subunit  33.56 
 
 
447 aa  220  3.9999999999999997e-56  Acidovorax sp. JS42  Bacteria  normal  normal  0.955686 
 
 
-
 
NC_009338  Mflv_0640  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  7e-56  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.409215  normal 
 
 
-
 
NC_009338  Mflv_0558  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  7e-56  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.559432  normal 
 
 
-
 
NC_008703  Mkms_5639  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  7e-56  Mycobacterium sp. KMS  Bacteria  normal  0.726822  normal 
 
 
-
 
NC_008704  Mkms_5855  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
447 aa  219  8.999999999999998e-56  Mycobacterium sp. KMS  Bacteria  normal  0.0274508  normal 
 
 
-
 
NC_008147  Mmcs_5458  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
447 aa  219  8.999999999999998e-56  Mycobacterium sp. MCS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1690  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  1e-55  Mycobacterium sp. KMS  Bacteria  normal  normal  0.688738 
 
 
-
 
NC_008146  Mmcs_1666  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  1e-55  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1639  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  219  1e-55  Mycobacterium sp. JLS  Bacteria  normal  0.548645  normal 
 
 
-
 
NC_008726  Mvan_0525  ring hydroxylating dioxygenase, alpha subunit  32.49 
 
 
463 aa  218  2e-55  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.110269  normal 
 
 
-
 
NC_013946  Mrub_2685  Aromatic-ring-hydroxylating dioxygenase subunit alpha  30.18 
 
 
444 aa  217  2.9999999999999998e-55  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.136091 
 
 
-
 
NC_010338  Caul_1917  Rieske (2Fe-2S) domain-containing protein  30.39 
 
 
458 aa  208  2e-52  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0546  ring hydroxylating dioxygenase, alpha subunit  31.32 
 
 
466 aa  207  3e-52  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008538  Arth_4346  Rieske (2Fe-2S) domain-containing protein  34.28 
 
 
505 aa  207  3e-52  Arthrobacter sp. FB24  Bacteria  normal  0.23778  n/a   
 
 
-
 
NC_008147  Mmcs_5450  ring hydroxylating dioxygenase, alpha subunit  32.05 
 
 
471 aa  206  6e-52  Mycobacterium sp. MCS  Bacteria  normal  normal 
 
 
-
 
NC_008704  Mkms_5847  ring hydroxylating dioxygenase, alpha subunit  32.05 
 
 
467 aa  206  6e-52  Mycobacterium sp. KMS  Bacteria  normal  0.0153324  normal 
 
 
-
 
NC_009338  Mflv_0537  ring hydroxylating dioxygenase, alpha subunit  31.32 
 
 
466 aa  206  8e-52  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.689442  normal 
 
 
-
 
NC_009077  Mjls_1660  ring hydroxylating dioxygenase, alpha subunit  31.32 
 
 
466 aa  204  3e-51  Mycobacterium sp. JLS  Bacteria  normal  0.188298  normal 
 
 
-
 
NC_008146  Mmcs_1689  ring hydroxylating dioxygenase, alpha subunit  31.32 
 
 
466 aa  204  3e-51  Mycobacterium sp. MCS  Bacteria  normal  0.550846  n/a   
 
 
-
 
NC_008705  Mkms_1716  ring hydroxylating dioxygenase, alpha subunit  31.32 
 
 
466 aa  204  3e-51  Mycobacterium sp. KMS  Bacteria  normal  0.77849  normal 
 
 
-
 
NC_009077  Mjls_1647  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium sp. JLS  Bacteria  normal  0.355106  normal 
 
 
-
 
NC_009338  Mflv_0550  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0533  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.379734  normal 
 
 
-
 
NC_009338  Mflv_0632  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.647669  normal 
 
 
-
 
NC_008705  Mkms_1698  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium sp. KMS  Bacteria  normal  normal  0.362681 
 
 
-
 
NC_008146  Mmcs_1673  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008703  Mkms_5647  ring hydroxylating dioxygenase, alpha subunit  31.59 
 
 
471 aa  203  4e-51  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_4280  Rieske (2Fe-2S) domain-containing protein  30.14 
 
 
423 aa  201  3e-50  Sphingomonas wittichii RW1  Bacteria  normal  0.369719  normal  0.899409 
 
 
-
 
NC_007953  Bxe_C0586  Rieske-type ring hydroxylating dioxygenase alpha subunit  29.19 
 
 
468 aa  199  7e-50  Burkholderia xenovorans LB400  Bacteria  normal  0.0659325  normal  0.154111 
 
 
-
 
NC_008538  Arth_4363  ring hydroxylating dioxygenase, alpha subunit  31.18 
 
 
487 aa  196  8.000000000000001e-49  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00000470921  n/a   
 
 
-
 
NC_008726  Mvan_0463  ring hydroxylating dioxygenase, alpha subunit  32.75 
 
 
484 aa  192  9e-48  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.328369  normal 
 
 
-
 
NC_009077  Mjls_4220  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
467 aa  192  1e-47  Mycobacterium sp. JLS  Bacteria  normal  normal  0.993865 
 
 
-
 
NC_009077  Mjls_4195  Rieske (2Fe-2S) domain-containing protein  30.92 
 
 
468 aa  192  1e-47  Mycobacterium sp. JLS  Bacteria  normal  0.613542  normal 
 
 
-
 
NC_009338  Mflv_0685  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
484 aa  192  1e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1622  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
484 aa  192  1e-47  Mycobacterium sp. MCS  Bacteria  normal  0.0299575  n/a   
 
 
-
 
NC_009077  Mjls_1595  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
483 aa  192  1e-47  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1647  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
484 aa  192  1e-47  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0595  ring hydroxylating dioxygenase, alpha subunit  31.86 
 
 
483 aa  191  2e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.577316  normal 
 
 
-
 
NC_010338  Caul_1974  Rieske (2Fe-2S) domain-containing protein  28.88 
 
 
467 aa  185  1.0000000000000001e-45  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4882  benzoate 1,2-dioxygenase subunit alpha  31.58 
 
 
464 aa  184  3e-45  Cupriavidus metallidurans CH34  Bacteria  normal  0.179471  normal  0.342768 
 
 
-
 
NC_002947  PP_3161  benzoate dioxygenase, alpha subunit  31.07 
 
 
452 aa  181  2e-44  Pseudomonas putida KT2440  Bacteria  normal  0.123489  normal  0.472768 
 
 
-
 
NC_009512  Pput_2554  Rieske (2Fe-2S) domain-containing protein  31.07 
 
 
452 aa  181  2e-44  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2688  benzoate 1,2-dioxygenase, large subunit  30.81 
 
 
457 aa  179  7e-44  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2710  benzoate 1,2-dioxygenase, large subunit  31.07 
 
 
452 aa  179  7e-44  Pseudomonas putida W619  Bacteria  normal  normal  0.109533 
 
 
-
 
NC_010623  Bphy_5352  benzoate 1,2-dioxygenase, large subunit  31.85 
 
 
455 aa  178  2e-43  Burkholderia phymatum STM815  Bacteria  normal  normal  0.587151 
 
 
-
 
NC_007952  Bxe_B0915  benzoate 1,2-dioxygenase subunit alpha BenA  31.55 
 
 
463 aa  178  2e-43  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487096 
 
 
-
 
NC_007348  Reut_B4403  benzoate 1,2-dioxygenase, alpha subunit  32.1 
 
 
465 aa  177  3e-43  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2321  benzoate 1,2-dioxygenase, alpha subunit  31.64 
 
 
452 aa  177  4e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2968  benzoate 1,2-dioxygenase, alpha subunit  30.89 
 
 
452 aa  177  4e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2778  ring hydroxylating dioxygenase, alpha subunit:Rieske (2Fe-2S) region  29.9 
 
 
446 aa  173  5e-42  Dechloromonas aromatica RCB  Bacteria  normal  0.604479  normal 
 
 
-
 
NC_011662  Tmz1t_3096  benzoate 1,2-dioxygenase, large subunit  29.63 
 
 
444 aa  171  2e-41  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0473  benzoate 1,2-dioxygenase, alpha subunit  30.48 
 
 
455 aa  171  3e-41  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2112  Rieske (2Fe-2S) domain-containing protein  30.38 
 
 
463 aa  170  5e-41  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.206436  normal  0.278449 
 
 
-
 
NC_010322  PputGB1_2209  Rieske (2Fe-2S) domain-containing protein  28.93 
 
 
427 aa  170  6e-41  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7046  ring hydroxylating dioxygenase, alpha subunit  29.21 
 
 
457 aa  170  6e-41  Burkholderia sp. 383  Bacteria  normal  normal  0.296981 
 
 
-
 
NC_011894  Mnod_2368  benzoate 1,2-dioxygenase, large subunit  31.17 
 
 
449 aa  170  6e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4158  benzoate 1,2-dioxygenase, large subunit  30.13 
 
 
475 aa  169  6e-41  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3238  Rieske (2Fe-2S) domain-containing protein  30.68 
 
 
452 aa  169  1e-40  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.174297 
 
 
-
 
NC_009075  BURPS668_A2725  benzoate 1,2 dioxygenase, alpha subunit  30.23 
 
 
455 aa  167  2e-40  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2581  benzoate 1,2 dioxygenase, alpha subunit  30.23 
 
 
455 aa  167  2e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_08590  Benzoate-1,2-dioxygenase oxygenase component, alpha subunit  31.03 
 
 
453 aa  167  2e-40  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1531  Rieske (2Fe-2S) domain-containing protein  30.37 
 
 
433 aa  167  4e-40  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0185016 
 
 
-
 
NC_006349  BMAA0187  benzoate 1,2-dioxygenase, alpha subunit  29.97 
 
 
455 aa  166  5.9999999999999996e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  0.132533  n/a   
 
 
-
 
NC_009079  BMA10247_A0215  benzoate 1,2-dioxygenase, alpha subunit  29.97 
 
 
455 aa  166  5.9999999999999996e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
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