| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2554 |
|---|
| Symbol | |
|---|
| ID | 5191920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2908013 |
|---|
| End bp | 2909371 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640587007 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_001267873 |
|---|
| Protein GI | 148547771 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | [TIGR03229] benzoate 1,2-dioxygenase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGG GATTCGACTA CCTCAATGCC ATGCTCGAGG ACGACCGTGA AAAGGGCATC
TACCGCTGCA AGCGGGAGAT GTTCACCGAC CCACGGTTGT TCGACCTGGA AATGAAACAC
ATCTTCGAGG GCAACTGGAT CTACCTGGCC CACGAAAGCC AGATCCCCGA GAAGAATGAC
TTCCTCACCC TGACCATGGG GCGCCAGCCG ATTTTCATCG CGCGCAACAA GGACGGTGAG
CTCAATGCCT TCCTCAACGC CTGCAGCCAT CGCGGTGCCA TGCTGTGCCG GCACAAGCGC
GGCAACCGTT CCAGCTATAC CTGCCCGTTC CACGGCTGGA CGTTCAACAA CAGCGGCAAA
CTGCTGAAGG TGAAAGACCC CAGCAACGCC GGCTACCCCG ACAGCTTCAA CTGCGACGGC
TCCCACGACC TGACCAAGGT GGCACGCTTC GAGTCGTACC GGGGCTTTTT GTTCGGCAGC
CTGAACGCCG ACGTGAAACC GCTGGTCGAG CACCTGGGCG AGTCAGCGAA GATCATCGAC
ATGATCGTCG ATCAGTCGCC TGAAGGCCTG GAAGTGCTGC GCGGTGCCAG CTCGTACATC
TACGAAGGCA ACTGGAAGCT CACCGCCGAA AACGGCGCTG ACGGCTACCA CGTAAGCTCC
GTGCACTGGA ACTACGCCGC CACCCAGAAC CAGCGCAAGC AGCGCGAGGC GGGTGACGAG
ATCAAGACCA TGAGTGCGGG TGCCTGGGCC AAGCAGGGCG GCGGTTTCTA TTCCTTCGAC
CACGGCCACC TGCTGCTGTG GACCCGCTGG GCCAACCCGG AAGACCGCCC GGCCTATGAG
CGCCGCGACC AACTGGCCGC CGACTTCGGC CAGGCACGCG CCGACTGGAT GATCGAAAAC
TCGCGCAACC TGTGCCTGTA CCCCAACGTG TACCTGATGG ACCAGTTCAG CTCGCAGATC
CGCGTCGCCC GGCCCATTTC GGTGAACAAG ACCGAAATCA CCATCTACTG CATCGCGCCG
AAAGGCGAGA GCGCCGATGC CCGCGCCAAG CGTATCCGCC AGTACGAAGA CTTCTTCAAC
GTCAGCGGCA TGGCCACCCC GGACGACCTG GAAGAATTCC GCTCGTGCCA GACCGGCTAT
GGCGGCGGCA CCGGCTGGAA CGACATGTCC CGCGGCGCCA AACACTGGGT CGAAGGCGCC
GATGAGGCAG CCAAGGAGAT TGAACTCGAA CCCCTGCTGT CGGGCGTGCG CACCGAGGAC
GAAGGCCTGT TCGTGCTGCA GCACAAGTAC TGGCAGGACA CCATGATCCA GGCCCTCAAG
GACGAACAGC AGCTGATCCC CGTGGAGGCC GTGCAATGA
|
|---|
| Protein sequence | MSLGFDYLNA MLEDDREKGI YRCKREMFTD PRLFDLEMKH IFEGNWIYLA HESQIPEKND
FLTLTMGRQP IFIARNKDGE LNAFLNACSH RGAMLCRHKR GNRSSYTCPF HGWTFNNSGK
LLKVKDPSNA GYPDSFNCDG SHDLTKVARF ESYRGFLFGS LNADVKPLVE HLGESAKIID
MIVDQSPEGL EVLRGASSYI YEGNWKLTAE NGADGYHVSS VHWNYAATQN QRKQREAGDE
IKTMSAGAWA KQGGGFYSFD HGHLLLWTRW ANPEDRPAYE RRDQLAADFG QARADWMIEN
SRNLCLYPNV YLMDQFSSQI RVARPISVNK TEITIYCIAP KGESADARAK RIRQYEDFFN
VSGMATPDDL EEFRSCQTGY GGGTGWNDMS RGAKHWVEGA DEAAKEIELE PLLSGVRTED
EGLFVLQHKY WQDTMIQALK DEQQLIPVEA VQ
|
|---|
| |