| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3842 |
|---|
| Symbol | |
|---|
| ID | 5077453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009426 |
|---|
| Strand | + |
|---|
| Start bp | 9846 |
|---|
| End bp | 11213 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640480952 |
|---|
| Product | ring hydroxylating dioxygenase, alpha subunit |
|---|
| Protein accession | YP_001165614 |
|---|
| Protein GI | 146275453 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCG AACGTATCGG TCGCGAACCG GATTATTCAC GCTACATGGA CCTCAAGGAA
GGCTGGCTTG ACCGCCGGAT CTTTTCGGAT GCCGACATCT ACGAGGAGGA GCTGTACCGC
ATTTTCGCGC GGTCGTGGCT GTTCGTTGCC CACGAAAGCC AGATCCCCAG TTCCGGAGAC
TTCCTGACGA CCCACATGGG CGAAGATGCG GTGATCGTCG CCCGCCAGCC CGACGGATCG
ATCCGGGTCA TGCTCAATTC CTGCCCGCAC CGCGGCAATA AGGTGTGCTT CGCCGATGCC
GGGAACACCC GTCGGTTCGT CTGCAATTAC CACGGCTGGG CGTTTGACAC CGCCGGCGAC
CTCAAGGGCA TGCACGAGGA ATATTGCTAC GACGCGGGCG ATATCGACTT CAAGAACCAT
GGCCTCAAGA ACGTCGCCAA GGTCGGCAAC TACAAGGGCC TGGTGTTCGC CACCTTCAAC
AGCGATGCGC CGAGCCTGGA AGCCTGGCTA GGCGATTTCC GGTGGTATCT CGACATGATC
CTCGACAACG AGGAAGGCGG CACCGAATTC ATTGGCGGCT GCATCAAGTC GGTGATCAGC
GCGAACTGGA AGTTCGGGGT CGAGAACTTC ATCGGCGACG CTTACCACGC CGGCTGGACG
CATGATTCGG GCACTCGGTC GATGAACAAC GGCCAGCCGT TCCCGCCGAT CGACATGGAT
AATTCCTATC ACGCCAGCGT GAACGGCCAC GGCTGGGAAT TCGGCACCGA AGGCGTGGGC
GACCTCTTCC TGCTCGGGCG CCCCAAGGTG ATGGACTATT ACAACAAGAT CCGCCCGAAG
ATGGCGGAAC GCCTGGGCGA GATGCGCTCG AAGATCTTCG GTTCGGTCGC CTCGGCATCG
ATCTTCCCCA ACGTCTCGTT CCTGCCGGGC ATTTCCACCT TCCGCCAGTG GCAACCCAAG
GGGCCGATGC AGTTCGAATT GAAGACCTGG GTGATCGTCA ACAAGAACAT GCCCGACGAC
ATCAAGGAGG AAGTGACCAA GGGCGTGATG CAGACCTTCG GCCCCGGTGG CACCTTCGAG
ATGGATGACG GGGAAAACTG GGAGAACTGC ACCACCGTCA ACCGCGGCGT CGTCACCCGG
CACGAGCGCC TGCACTATCG CTGCGGGATC GGCCGCCAGA TCGAACATGA TACCCTGCCG
GGCATCGTCT ATCGCGGCCA GTACAACGAC GCCAACCAGC GCGGCTTCTA CCAGCGCTGG
CTCGACATGA TGACCCATGA CGAATTCGGC AAGATGCCGG CACGGCCCGA ACCGCAGCTG
GGCAATGTGG CCGAAACCCG CGACCTTCCC GGCCTGTTCG CGCTCTGA
|
|---|
| Protein sequence | MRFERIGREP DYSRYMDLKE GWLDRRIFSD ADIYEEELYR IFARSWLFVA HESQIPSSGD
FLTTHMGEDA VIVARQPDGS IRVMLNSCPH RGNKVCFADA GNTRRFVCNY HGWAFDTAGD
LKGMHEEYCY DAGDIDFKNH GLKNVAKVGN YKGLVFATFN SDAPSLEAWL GDFRWYLDMI
LDNEEGGTEF IGGCIKSVIS ANWKFGVENF IGDAYHAGWT HDSGTRSMNN GQPFPPIDMD
NSYHASVNGH GWEFGTEGVG DLFLLGRPKV MDYYNKIRPK MAERLGEMRS KIFGSVASAS
IFPNVSFLPG ISTFRQWQPK GPMQFELKTW VIVNKNMPDD IKEEVTKGVM QTFGPGGTFE
MDDGENWENC TTVNRGVVTR HERLHYRCGI GRQIEHDTLP GIVYRGQYND ANQRGFYQRW
LDMMTHDEFG KMPARPEPQL GNVAETRDLP GLFAL
|
|---|
| |