| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2688 |
|---|
| Symbol | |
|---|
| ID | 5870476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3013494 |
|---|
| End bp | 3014867 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547809 |
|---|
| Product | benzoate 1,2-dioxygenase, large subunit |
|---|
| Protein accession | YP_001668921 |
|---|
| Protein GI | 167033690 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | [TIGR03229] benzoate 1,2-dioxygenase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACCC TGGCCATGTC CCTGGGATTC GACTACCTCA ATGCCATGCT CGAGGACGAC
CGTGAAAAGG GCATCTACCG CTGCAAGCGC GTGATGTTCA CCGACCCACG CCTGTTCGAC
CTGGAGATGA AACACATCTT CGAGGGCAAC TGGATCTATC TGGCCCATGA AAGCCAGATC
CCCGAAAAGA ACGACTTCCT CAGCCTGACC ATGGGGCGCC AGCCGATTTT CATCGCGCGC
AACAAGGACG GTGAGCTCAA TGCCTTCCTC AATGCCTGCA GCCACCGTGG CGCCATGCTG
TGCCGGCACA AGCGCGGTAA CCGCTCCAGC TACACCTGCC CATTCCACGG CTGGACGTTC
AACAACAGCG GCAAGCTGCT GAAGGTGAAA GACCCGAGCA ATGCCGGCTA CCCCGACAGC
TTCAACTGCG ACGGCTCCCA CGACCTGACC AAGGTGGCGC GCTTCGAGTC GTACCGGGGC
TTTCTGTTCG GCAGCCTGAA CGCCGATGTA AAACCGCTGG TGGAACACCT GGGCGAGTCG
GCCAAGATCA TCGACATGAT CGTCGATCAG TCGCCGGAGG GTCTGGAAGT GCTGCGCGGT
GCCAGCTCGT ACATCTACGA AGGCAACTGG AAGCTCACCG CCGAAAACGG CGCCGACGGC
TACCACGTCA GCTCCGTGCA CTGGAACTAC GCCGCCACCC AGAACCAGCG CAAGCAGCGC
GAAGCGGGTG ACGAGATCAA GACCATGAGC GCCGGTTCCT GGGCCAAGCA GGGCGGCGGC
TTCTACTCCT TCGACCACGG CCACCTGCTG CTGTGGACCC GCTGGGCCAA CCCCGAAGAC
CGCCCGGCCT ACGAGCGCCG CGACCAGCTG GCCGCCGACT TCGGCCAGGC CCGCGCCGAC
TGGATGATCG AAAACTCGCG CAACCTGTGC CTGTACCCCA ACGTTTACCT GATGGACCAG
TTCAGCTCGC AGATCCGCGT TGCCCGGCCG ATTTCGGTGA ACAAGACCGA AATCACCATC
TATTGCATCG CGCCGAAAGG CGAGAGTGCC GATGCCCGTG CCAAGCGCAT CCGCCAATAC
GAAGACTTCT TCAATGTCAG CGGCATGGCC ACCCCGGACG ACCTGGAAGA GTTCCGCTCG
TGCCAGACCG GCTACGGCGG CGGCACCGGT TGGAACGATA TGTCCCGCGG TGCTAAACAT
TGGGTCGAAG GCGCTGATGA GGCCGCCAAG GAAATCGAAC TCGAACCGCT ATTGTCCGGC
GTGCGCACCG AGGACGAAGG CCTGTTCGTG CTGCAGCACA AGTACTGGCA GGACACCATG
ATCCAGGCCC TCAAGGACGA ACAGCAACTG ATCCCCGTGG AGGCCGTGCA ATGA
|
|---|
| Protein sequence | METLAMSLGF DYLNAMLEDD REKGIYRCKR VMFTDPRLFD LEMKHIFEGN WIYLAHESQI
PEKNDFLSLT MGRQPIFIAR NKDGELNAFL NACSHRGAML CRHKRGNRSS YTCPFHGWTF
NNSGKLLKVK DPSNAGYPDS FNCDGSHDLT KVARFESYRG FLFGSLNADV KPLVEHLGES
AKIIDMIVDQ SPEGLEVLRG ASSYIYEGNW KLTAENGADG YHVSSVHWNY AATQNQRKQR
EAGDEIKTMS AGSWAKQGGG FYSFDHGHLL LWTRWANPED RPAYERRDQL AADFGQARAD
WMIENSRNLC LYPNVYLMDQ FSSQIRVARP ISVNKTEITI YCIAPKGESA DARAKRIRQY
EDFFNVSGMA TPDDLEEFRS CQTGYGGGTG WNDMSRGAKH WVEGADEAAK EIELEPLLSG
VRTEDEGLFV LQHKYWQDTM IQALKDEQQL IPVEAVQ
|
|---|
| |