More than 300 homologs were found in PanDaTox collection
for query gene Pput_2881 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007953  Bxe_C1197  biphenyl 2,3-dioxygenase alpha subunit (BphA1)  64.84 
 
 
459 aa  636    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008757  Pnap_4152  ring hydroxylating dioxygenase, alpha subunit  65.86 
 
 
456 aa  649    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.424226  normal  0.388878 
 
 
-
 
NC_009512  Pput_2881  ring hydroxylating dioxygenase, alpha subunit  100 
 
 
450 aa  944    Pseudomonas putida F1  Bacteria  normal  0.912394  normal  0.0432092 
 
 
-
 
NC_008726  Mvan_4415  ring hydroxylating dioxygenase, alpha subunit  47.8 
 
 
446 aa  407  1.0000000000000001e-112  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.415837  normal 
 
 
-
 
CP001509  ECD_02430  3-phenylpropionate dioxygenase, large (alpha) subunit  48.97 
 
 
453 aa  402  1e-111  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1130  Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  48.97 
 
 
453 aa  402  1e-111  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02394  hypothetical protein  48.97 
 
 
453 aa  402  1e-111  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2691  3-phenylpropionate dioxygenase alpha subunit  48.97 
 
 
453 aa  402  1e-111  Escherichia coli SMS-3-5  Bacteria  normal  0.244955  normal 
 
 
-
 
NC_010468  EcolC_1139  aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  48.97 
 
 
453 aa  402  1e-111  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2690  3-phenylpropionate dioxygenase alpha subunit  48.75 
 
 
453 aa  400  9.999999999999999e-111  Escherichia coli HS  Bacteria  normal  0.163483  n/a   
 
 
-
 
NC_009511  Swit_0890  ring hydroxylating dioxygenase, alpha subunit  43.86 
 
 
497 aa  359  7e-98  Sphingomonas wittichii RW1  Bacteria  normal  0.145074  normal  0.391683 
 
 
-
 
NC_009508  Swit_4897  ring hydroxylating dioxygenase, alpha subunit  43.09 
 
 
435 aa  331  2e-89  Sphingomonas wittichii RW1  Bacteria  normal  0.227325  normal  0.4666 
 
 
-
 
NC_007298  Daro_3246  ring hydroxylating dioxygenase, alpha subunit:Rieske (2Fe-2S) region  39.57 
 
 
456 aa  321  9.999999999999999e-87  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000178778  normal 
 
 
-
 
NC_009426  Saro_3842  ring hydroxylating dioxygenase, alpha subunit  40.22 
 
 
455 aa  321  1.9999999999999998e-86  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_42190  aromatic ring hydroxylating dioxygenase, alpha subunit  40.18 
 
 
448 aa  314  1.9999999999999998e-84  Azotobacter vinelandii DJ  Bacteria  normal  0.0579776  n/a   
 
 
-
 
NC_013739  Cwoe_0435  Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein  40.19 
 
 
427 aa  310  4e-83  Conexibacter woesei DSM 14684  Bacteria  normal  decreased coverage  0.00493775 
 
 
-
 
NC_009426  Saro_3901  ring hydroxylating dioxygenase, alpha subunit  40.18 
 
 
459 aa  308  9e-83  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.682799  n/a   
 
 
-
 
NC_009426  Saro_3840  ring hydroxylating dioxygenase, alpha subunit  37.19 
 
 
450 aa  286  8e-76  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0632  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.647669  normal 
 
 
-
 
NC_009338  Mflv_0550  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1647  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium sp. JLS  Bacteria  normal  0.355106  normal 
 
 
-
 
NC_008703  Mkms_5647  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1673  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1698  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  257  3e-67  Mycobacterium sp. KMS  Bacteria  normal  normal  0.362681 
 
 
-
 
NC_008538  Arth_4346  Rieske (2Fe-2S) domain-containing protein  33.76 
 
 
505 aa  257  3e-67  Arthrobacter sp. FB24  Bacteria  normal  0.23778  n/a   
 
 
-
 
NC_008726  Mvan_0533  ring hydroxylating dioxygenase, alpha subunit  34.95 
 
 
471 aa  256  4e-67  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.379734  normal 
 
 
-
 
NC_013946  Mrub_2685  Aromatic-ring-hydroxylating dioxygenase subunit alpha  36.01 
 
 
444 aa  256  6e-67  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.136091 
 
 
-
 
NC_008147  Mmcs_5450  ring hydroxylating dioxygenase, alpha subunit  34.51 
 
 
471 aa  254  2.0000000000000002e-66  Mycobacterium sp. MCS  Bacteria  normal  normal 
 
 
-
 
NC_008704  Mkms_5847  ring hydroxylating dioxygenase, alpha subunit  34.51 
 
 
467 aa  254  2.0000000000000002e-66  Mycobacterium sp. KMS  Bacteria  normal  0.0153324  normal 
 
 
-
 
NC_008782  Ajs_3092  ring hydroxylating dioxygenase, alpha subunit  34.69 
 
 
447 aa  247  4e-64  Acidovorax sp. JS42  Bacteria  normal  normal  0.955686 
 
 
-
 
NC_008726  Mvan_0539  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0984806  normal 
 
 
-
 
NC_008705  Mkms_1709  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium sp. KMS  Bacteria  normal  0.211814  normal  0.573213 
 
 
-
 
NC_009077  Mjls_1653  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0544  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1680  Rieske (2Fe-2S) region  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008703  Mkms_5610  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  1.9999999999999999e-63  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0626  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  3e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008704  Mkms_5838  Rieske (2Fe-2S) domain-containing protein  36.03 
 
 
438 aa  244  3e-63  Mycobacterium sp. KMS  Bacteria  normal  0.1481  normal 
 
 
-
 
NC_008147  Mmcs_5441  Rieske (2Fe-2S) region  36.03 
 
 
438 aa  244  3e-63  Mycobacterium sp. MCS  Bacteria  normal  0.0352555  normal  0.90702 
 
 
-
 
NC_008781  Pnap_2485  ring hydroxylating dioxygenase, alpha subunit  33.89 
 
 
447 aa  243  3.9999999999999997e-63  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008703  Mkms_5639  ring hydroxylating dioxygenase, alpha subunit  33.63 
 
 
463 aa  243  5e-63  Mycobacterium sp. KMS  Bacteria  normal  0.726822  normal 
 
 
-
 
NC_009338  Mflv_0558  ring hydroxylating dioxygenase, alpha subunit  33.63 
 
 
463 aa  243  6e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.559432  normal 
 
 
-
 
NC_009338  Mflv_0640  ring hydroxylating dioxygenase, alpha subunit  33.63 
 
 
463 aa  243  6e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.409215  normal 
 
 
-
 
NC_008726  Mvan_0488  ring hydroxylating dioxygenase, alpha subunit  34.72 
 
 
455 aa  242  1e-62  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0525  ring hydroxylating dioxygenase, alpha subunit  33.63 
 
 
463 aa  242  1e-62  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.110269  normal 
 
 
-
 
NC_008703  Mkms_5626  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
458 aa  241  1e-62  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008704  Mkms_5855  ring hydroxylating dioxygenase, alpha subunit  33.41 
 
 
447 aa  241  2e-62  Mycobacterium sp. KMS  Bacteria  normal  0.0274508  normal 
 
 
-
 
NC_009077  Mjls_1617  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
455 aa  241  2e-62  Mycobacterium sp. JLS  Bacteria  normal  0.541424  normal 
 
 
-
 
NC_009338  Mflv_0567  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
458 aa  241  2e-62  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0662  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
455 aa  241  2e-62  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1639  ring hydroxylating dioxygenase, alpha subunit  33.41 
 
 
463 aa  241  2e-62  Mycobacterium sp. JLS  Bacteria  normal  0.548645  normal 
 
 
-
 
NC_009077  Mjls_2237  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
458 aa  241  2e-62  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1642  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
455 aa  241  2e-62  Mycobacterium sp. MCS  Bacteria  normal  0.973879  n/a   
 
 
-
 
NC_008146  Mmcs_1666  ring hydroxylating dioxygenase, alpha subunit  33.41 
 
 
463 aa  241  2e-62  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008147  Mmcs_5458  ring hydroxylating dioxygenase, alpha subunit  33.41 
 
 
447 aa  241  2e-62  Mycobacterium sp. MCS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1668  ring hydroxylating dioxygenase, alpha subunit  34.49 
 
 
455 aa  241  2e-62  Mycobacterium sp. KMS  Bacteria  normal  0.779225  normal 
 
 
-
 
NC_008705  Mkms_1690  ring hydroxylating dioxygenase, alpha subunit  33.41 
 
 
463 aa  241  2e-62  Mycobacterium sp. KMS  Bacteria  normal  normal  0.688738 
 
 
-
 
NC_008726  Mvan_0546  ring hydroxylating dioxygenase, alpha subunit  34.17 
 
 
466 aa  238  1e-61  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0537  ring hydroxylating dioxygenase, alpha subunit  34.17 
 
 
466 aa  239  1e-61  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.689442  normal 
 
 
-
 
NC_009077  Mjls_1595  ring hydroxylating dioxygenase, alpha subunit  34.62 
 
 
483 aa  238  2e-61  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1647  ring hydroxylating dioxygenase, alpha subunit  34.62 
 
 
484 aa  238  2e-61  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1622  ring hydroxylating dioxygenase, alpha subunit  34.62 
 
 
484 aa  238  2e-61  Mycobacterium sp. MCS  Bacteria  normal  0.0299575  n/a   
 
 
-
 
NC_009511  Swit_4280  Rieske (2Fe-2S) domain-containing protein  35.51 
 
 
423 aa  238  2e-61  Sphingomonas wittichii RW1  Bacteria  normal  0.369719  normal  0.899409 
 
 
-
 
NC_009338  Mflv_0595  ring hydroxylating dioxygenase, alpha subunit  34.38 
 
 
483 aa  237  4e-61  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.577316  normal 
 
 
-
 
NC_009077  Mjls_1660  ring hydroxylating dioxygenase, alpha subunit  34.17 
 
 
466 aa  237  4e-61  Mycobacterium sp. JLS  Bacteria  normal  0.188298  normal 
 
 
-
 
NC_008705  Mkms_1716  ring hydroxylating dioxygenase, alpha subunit  34.17 
 
 
466 aa  237  4e-61  Mycobacterium sp. KMS  Bacteria  normal  0.77849  normal 
 
 
-
 
NC_008146  Mmcs_1689  ring hydroxylating dioxygenase, alpha subunit  34.17 
 
 
466 aa  237  4e-61  Mycobacterium sp. MCS  Bacteria  normal  0.550846  n/a   
 
 
-
 
NC_009338  Mflv_0685  ring hydroxylating dioxygenase, alpha subunit  34.13 
 
 
484 aa  235  2.0000000000000002e-60  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0463  ring hydroxylating dioxygenase, alpha subunit  34.29 
 
 
484 aa  234  3e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.328369  normal 
 
 
-
 
NC_008538  Arth_4363  ring hydroxylating dioxygenase, alpha subunit  32.83 
 
 
487 aa  233  7.000000000000001e-60  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00000470921  n/a   
 
 
-
 
NC_010338  Caul_1917  Rieske (2Fe-2S) domain-containing protein  34 
 
 
458 aa  229  6e-59  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4220  ring hydroxylating dioxygenase, alpha subunit  32.68 
 
 
467 aa  227  3e-58  Mycobacterium sp. JLS  Bacteria  normal  normal  0.993865 
 
 
-
 
NC_007953  Bxe_C0586  Rieske-type ring hydroxylating dioxygenase alpha subunit  29.55 
 
 
468 aa  215  9.999999999999999e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.0659325  normal  0.154111 
 
 
-
 
NC_009077  Mjls_4195  Rieske (2Fe-2S) domain-containing protein  30.18 
 
 
468 aa  208  1e-52  Mycobacterium sp. JLS  Bacteria  normal  0.613542  normal 
 
 
-
 
NC_010338  Caul_1974  Rieske (2Fe-2S) domain-containing protein  30.52 
 
 
467 aa  197  4.0000000000000005e-49  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5382  Rieske (2Fe-2S) domain protein  29.44 
 
 
438 aa  176  9.999999999999999e-43  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4174  Rieske (2Fe-2S) domain-containing protein  30.11 
 
 
440 aa  169  7e-41  Sphingomonas wittichii RW1  Bacteria  hitchhiker  0.000409814  normal  0.0305498 
 
 
-
 
NC_008146  Mmcs_1373  Rieske (2Fe-2S) region  29.27 
 
 
462 aa  167  4e-40  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1391  Rieske (2Fe-2S) domain-containing protein  29.27 
 
 
462 aa  167  4e-40  Mycobacterium sp. KMS  Bacteria  normal  0.109638  normal 
 
 
-
 
NC_007348  Reut_B4403  benzoate 1,2-dioxygenase, alpha subunit  28.95 
 
 
465 aa  166  5e-40  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2209  Rieske (2Fe-2S) domain-containing protein  29.08 
 
 
427 aa  166  6.9999999999999995e-40  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0915  benzoate 1,2-dioxygenase subunit alpha BenA  28.33 
 
 
463 aa  164  2.0000000000000002e-39  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487096 
 
 
-
 
NC_010515  Bcenmc03_3901  Rieske (2Fe-2S) domain-containing protein  29.26 
 
 
427 aa  164  3e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.812744 
 
 
-
 
NC_007511  Bcep18194_B2496  ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein  29.57 
 
 
427 aa  163  5.0000000000000005e-39  Burkholderia sp. 383  Bacteria  normal  0.0124288  normal 
 
 
-
 
NC_008543  Bcen2424_3619  Rieske (2Fe-2S) domain-containing protein  28.88 
 
 
427 aa  163  5.0000000000000005e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0164916  normal 
 
 
-
 
NC_008699  Noca_0683  Rieske (2Fe-2S) domain-containing protein  28.97 
 
 
424 aa  163  5.0000000000000005e-39  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1407  Rieske (2Fe-2S) domain-containing protein  28.82 
 
 
462 aa  162  1e-38  Mycobacterium sp. JLS  Bacteria  normal  0.0632088  normal 
 
 
-
 
NC_011894  Mnod_2368  benzoate 1,2-dioxygenase, large subunit  28.15 
 
 
449 aa  161  2e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1324  benzoate 1,2-dioxygenase, large subunit  28.53 
 
 
442 aa  161  3e-38  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0648485 
 
 
-
 
NC_013441  Gbro_4158  benzoate 1,2-dioxygenase, large subunit  29.29 
 
 
475 aa  160  4e-38  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5355  Rieske (2Fe-2S) domain-containing protein  28.16 
 
 
427 aa  160  4e-38  Burkholderia ambifaria AMMD  Bacteria  normal  0.569805  normal  0.872686 
 
 
-
 
NC_010552  BamMC406_3525  Rieske (2Fe-2S) domain-containing protein  28.64 
 
 
427 aa  160  4e-38  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0996141 
 
 
-
 
NC_007650  BTH_II0327  benzoate 1,2-dioxygenase, alpha subunit  37.82 
 
 
427 aa  160  6e-38  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4882  benzoate 1,2-dioxygenase subunit alpha  27.68 
 
 
464 aa  159  7e-38  Cupriavidus metallidurans CH34  Bacteria  normal  0.179471  normal  0.342768 
 
 
-
 
NC_007492  Pfl01_2968  benzoate 1,2-dioxygenase, alpha subunit  27.22 
 
 
452 aa  159  8e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2105  putative (poly)aromatic ring hydroxylating dioxygenase, alpha subunit (Rieske (2Fe-2S) region)  28.6 
 
 
427 aa  159  9e-38  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2156  Rieske (2Fe-2S) domain protein  28.15 
 
 
427 aa  159  9e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1134  ring hydroxylating dioxygenase alpha subunit  27.78 
 
 
462 aa  158  2e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5352  benzoate 1,2-dioxygenase, large subunit  29.48 
 
 
455 aa  158  2e-37  Burkholderia phymatum STM815  Bacteria  normal  normal  0.587151 
 
 
-
 
NC_010086  Bmul_5079  Rieske (2Fe-2S) domain-containing protein  27.59 
 
 
448 aa  158  2e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.253861 
 
 
-
 
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