| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5382 |
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| Symbol | |
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| ID | 7975843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 88355 |
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| End bp | 89671 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795976 |
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| Product | Rieske (2Fe-2S) domain protein |
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| Protein accession | YP_002947250 |
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| Protein GI | 239820065 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG ACCTGCAAGG GCTCGTGCAG CCCGACCGCG TGCACAAGCG CGTCTACACC
GACCCCGACA TCTTCGAGCT GGAGATGGAC CGCGTGTTCG GCCAGGCCTG GATCTACATC
GGCCACGAAA GCCAGGTGCC CAAGCCCGGC GACTACTTCA CCACCCGCCT GGGCCGCGAG
CCCGTGGTGA TGGTGCGGCA CACCGACGGC CAGGTGCATG TGATGTTCAA CCGCTGCCCG
CACAAGGGCG CCAGGATCGT GCCCGACGGC AGCGGCAGCG CCGGCAAGTT TTTGCGCTGC
CTGTACCACG GCTGGACCTT CAAGTGCGAC GGCAGCCTGC TGTCGGTGCC GCTGCGCAGC
GGCTACGAAT GCACCGCGCT CGACCTGAAA GACCCGCAGT ACGGCGTGCG CAAGGTGGCA
CGCGTGGCCA CGCACCGCGG CTTCGTGTTC GCCAGCCTGT CGGCGGACGG GCCGGAACTG
AAGGAATTCC TGGGCGGCGT GGCTACGTCG CTCGACAACT TCTGCGACCG CGCGCCCGAG
GGCGAAGTGG AGGTGGCGGG CGGCGTGCAG CGCGTGATCC AGCGCAACAA CTGGAAGATC
TTCTTCGAGA ACCTGCACGA CACCATCCAC GCCGTGGCCA CGCACGAATC GTCGTGGCGC
GCAGCCAAGG AAGAGTACGA AGCCATGCCG GCCGGCACGC CCAAGCCCTT CGAGGTGGTG
ATCGTCGACG GCAACGGCGA GCCGCTGGAA TTCTGGGAGA AGCTCGAACT CAAGGGCTAC
GACCATGGCC ATGGCTTCAT GGAAGGCATC TTCGTGCCGC CGACCGATCC GGTGAGCCTG
GCGTATGTGG CGTCGCTCGA AGCGGCGAAG GGTGCCGAGC GCGCGGGCGA GATCCTGCGC
GTGAACCGGC ACAACACCAT CGTGTACCCG AGCTGCTCGC CGCACACCTC GTTCCAGCAG
ATCCGCGTGA TCCGGCCGCT GTCGGTGGAC CGCACGCTGG TCGAGATCTT CAGCTTCCGG
CTGAAGGGTG CGCCGGAGGC CACCTTCCAG CGCACGCTCA AGTACACCAA CATCGTCAAC
TCGCCTTCGT CGAACGTGAT GCCCGACGAC CTGGAGGCCT ACAACCGCGT GCAGGAAGGC
CTGGGCTCCA ATGGCGGCGA CTGGGTCAGC ATGCACCGCG CGGCAGGGCG CGACCAGCCG
CTGCCGGGCG GGCGCGCGTC CAACGGCAAC AGCGAGATGC CCTCGCGCAA CATGTTCGCG
GCCTGGGCTG GCTACATGGG CGTCAAGACG AACGAACACG CCGGGAGCGC CGAATGA
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| Protein sequence | MTIDLQGLVQ PDRVHKRVYT DPDIFELEMD RVFGQAWIYI GHESQVPKPG DYFTTRLGRE
PVVMVRHTDG QVHVMFNRCP HKGARIVPDG SGSAGKFLRC LYHGWTFKCD GSLLSVPLRS
GYECTALDLK DPQYGVRKVA RVATHRGFVF ASLSADGPEL KEFLGGVATS LDNFCDRAPE
GEVEVAGGVQ RVIQRNNWKI FFENLHDTIH AVATHESSWR AAKEEYEAMP AGTPKPFEVV
IVDGNGEPLE FWEKLELKGY DHGHGFMEGI FVPPTDPVSL AYVASLEAAK GAERAGEILR
VNRHNTIVYP SCSPHTSFQQ IRVIRPLSVD RTLVEIFSFR LKGAPEATFQ RTLKYTNIVN
SPSSNVMPDD LEAYNRVQEG LGSNGGDWVS MHRAAGRDQP LPGGRASNGN SEMPSRNMFA
AWAGYMGVKT NEHAGSAE
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