More than 300 homologs were found in PanDaTox collection
for query gene SYO3AOP1_0478 on replicon NC_010730
Organism: Sulfurihydrogenibium sp. YO3AOP1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010730  SYO3AOP1_0478  transcriptional regulator, LysR family  100 
 
 
290 aa  575  1.0000000000000001e-163  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0101609  n/a   
 
 
-
 
NC_010552  BamMC406_4630  LysR family transcriptional regulator  31.23 
 
 
302 aa  157  1e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013732  Slin_6941  transcriptional regulator, LysR family  30 
 
 
298 aa  155  6e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_1345  transcriptional regulator, LysR family  31.06 
 
 
307 aa  150  2e-35  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1148  transcriptional regulator, LysR family  31.72 
 
 
303 aa  150  3e-35  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000219344  n/a   
 
 
-
 
NC_010655  Amuc_0701  transcriptional regulator, LysR family  31.51 
 
 
307 aa  149  5e-35  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0411  LysR family transcriptional regulator  30.64 
 
 
308 aa  149  5e-35  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4870  LysR family transcriptional regulator  33.21 
 
 
297 aa  148  1.0000000000000001e-34  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5263  transcriptional regulator, LysR family  33.21 
 
 
297 aa  148  1.0000000000000001e-34  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_4855  LysR family transcriptional regulator  33.21 
 
 
297 aa  147  2.0000000000000003e-34  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5338  transcriptional regulator, LysR family  33.21 
 
 
297 aa  147  2.0000000000000003e-34  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3716  LysR family transcriptional regulator  32.53 
 
 
297 aa  146  3e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1454  LysR family transcriptional regulator  33.81 
 
 
294 aa  145  5e-34  Clostridium perfringens SM101  Bacteria  normal  0.0215589  n/a   
 
 
-
 
NC_011725  BCB4264_A5293  transcriptional regulator, LysR family  32.85 
 
 
297 aa  145  6e-34  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0509  transcriptional regulator, LysR family  31.85 
 
 
293 aa  145  6e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.187244  hitchhiker  0.00160332 
 
 
-
 
NC_005945  BAS5025  LysR family transcriptional regulator  32.85 
 
 
297 aa  145  7.0000000000000006e-34  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5406  LysR family transcriptional regulator  32.85 
 
 
297 aa  145  7.0000000000000006e-34  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5664  transcriptional regulator, LysR family  32.85 
 
 
297 aa  145  9e-34  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5280  LysR family transcriptional regulator  33.09 
 
 
297 aa  144  1e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4969  LysR family transcriptional regulator  32.65 
 
 
297 aa  145  1e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1726  LysR family transcriptional regulator  32 
 
 
294 aa  144  1e-33  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000000302117  n/a   
 
 
-
 
NC_009439  Pmen_0456  LysR family transcriptional regulator  27.59 
 
 
294 aa  144  1e-33  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2199  transcriptional regulator, LysR family  31.62 
 
 
298 aa  144  2e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_1555  LysR family transcriptional regulator  31.02 
 
 
318 aa  143  3e-33  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.0000000214293  n/a   
 
 
-
 
NC_007644  Moth_0448  LysR family transcriptional regulator  30 
 
 
297 aa  143  3e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2840  LysR family transcriptional regulator  28.38 
 
 
299 aa  143  3e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2915  transcriptional regulator, LysR family  28.12 
 
 
305 aa  143  4e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0284  LysR family transcriptional regulator  31.38 
 
 
294 aa  143  4e-33  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1614  LysR family transcriptional regulator  27.92 
 
 
311 aa  143  4e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.625262  n/a   
 
 
-
 
NC_013132  Cpin_0902  transcriptional regulator, LysR family  31.39 
 
 
307 aa  142  5e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1791  LysR family transcriptional regulator  30.45 
 
 
290 aa  140  1.9999999999999998e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.027343 
 
 
-
 
NC_013730  Slin_4870  transcriptional regulator, LysR family  27.8 
 
 
298 aa  140  1.9999999999999998e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0269  LysR substrate-binding  30.64 
 
 
298 aa  140  1.9999999999999998e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  0.670723  normal 
 
 
-
 
NC_013216  Dtox_3776  transcriptional regulator, LysR family  30.22 
 
 
314 aa  140  1.9999999999999998e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.988638  normal 
 
 
-
 
NC_011206  Lferr_1817  transcriptional regulator, LysR family  29.35 
 
 
303 aa  139  3.9999999999999997e-32  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2531  transcriptional regulator, LysR family  30 
 
 
308 aa  139  3.9999999999999997e-32  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.351481  n/a   
 
 
-
 
NC_011761  AFE_2158  transcriptional regulator, LysR family  29.35 
 
 
301 aa  139  3.9999999999999997e-32  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2159  transcriptional regulator, LysR family  30 
 
 
308 aa  139  3.9999999999999997e-32  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.597139  hitchhiker  0.0000167573 
 
 
-
 
NC_008576  Mmc1_0449  LysR family transcriptional regulator  30 
 
 
307 aa  139  3.9999999999999997e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00010985  normal 
 
 
-
 
NC_011901  Tgr7_0820  transcriptional regulator, LysR family  28.57 
 
 
307 aa  138  1e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0263  transcriptional regulator, LysR family  30.42 
 
 
322 aa  138  1e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1877  LysR family transcriptional regulator  31.97 
 
 
297 aa  137  2e-31  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000269934  normal 
 
 
-
 
NC_003295  RSc1110  transcriptional regulatory DNA-binding transcription regulator protein  27.24 
 
 
306 aa  136  3.0000000000000003e-31  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00000488361  normal  0.138015 
 
 
-
 
NC_011662  Tmz1t_2680  transcriptional regulator, LysR family  26.83 
 
 
308 aa  137  3.0000000000000003e-31  Thauera sp. MZ1T  Bacteria  normal  0.578382  n/a   
 
 
-
 
NC_008782  Ajs_2818  LysR family transcriptional regulator  27.78 
 
 
304 aa  136  3.0000000000000003e-31  Acidovorax sp. JS42  Bacteria  normal  0.246785  normal  0.200278 
 
 
-
 
NC_011992  Dtpsy_2307  transcriptional regulator, LysR family  27.78 
 
 
304 aa  136  3.0000000000000003e-31  Acidovorax ebreus TPSY  Bacteria  normal  0.870686  n/a   
 
 
-
 
NC_007298  Daro_1985  regulatory protein, LysR:LysR, substrate-binding  30.8 
 
 
300 aa  135  9.999999999999999e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.464368 
 
 
-
 
NC_012856  Rpic12D_1050  transcriptional regulator, LysR family  27.08 
 
 
308 aa  134  9.999999999999999e-31  Ralstonia pickettii 12D  Bacteria  normal  0.0198617  normal  0.025944 
 
 
-
 
NC_007517  Gmet_1084  LysR family transcriptional regulator  27.65 
 
 
297 aa  134  9.999999999999999e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000126748  hitchhiker  0.00000896339 
 
 
-
 
NC_010424  Daud_0065  LysR family transcriptional regulator  31.29 
 
 
296 aa  134  9.999999999999999e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02086  predicted DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli BL21(DE3)  Bacteria  normal  0.0640427  n/a   
 
 
-
 
NC_011353  ECH74115_3293  putative DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.020887  normal  0.438576 
 
 
-
 
NC_012892  B21_02045  hypothetical protein  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli BL21  Bacteria  normal  0.074382  n/a   
 
 
-
 
NC_010498  EcSMS35_2304  putative DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00791446 
 
 
-
 
NC_009800  EcHS_A2293  putative DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1657  putative DNA-binding transcriptional regulator  29.54 
 
 
290 aa  134  1.9999999999999998e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0307226  n/a   
 
 
-
 
NC_009801  EcE24377A_2454  putative DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  1.9999999999999998e-30  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0809  putative DNA-binding transcriptional regulator  30.5 
 
 
293 aa  134  3e-30  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05450  transcriptional regulator, LysR family  31.47 
 
 
296 aa  133  3e-30  Halothermothrix orenii H 168  Bacteria  normal  0.0434511  n/a   
 
 
-
 
NC_014212  Mesil_2775  transcriptional regulator, LysR family  28.07 
 
 
297 aa  133  3e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  0.332368  normal 
 
 
-
 
NC_008346  Swol_0666  LysR family transcriptional regulator  33.11 
 
 
295 aa  133  3e-30  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0953  transcriptional regulator, LysR family  26.48 
 
 
311 aa  132  6e-30  Ralstonia pickettii 12J  Bacteria  normal  0.0145345  decreased coverage  0.00704929 
 
 
-
 
NC_008346  Swol_1191  putative transcriptional regulator  30.99 
 
 
290 aa  132  6e-30  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2523  LysR family transcriptional regulator  27.78 
 
 
298 aa  132  1.0000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  0.0665746  n/a   
 
 
-
 
NC_013411  GYMC61_1679  transcriptional regulator, LysR family  31.48 
 
 
304 aa  131  1.0000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_1928  putative DNA-binding transcriptional regulator  29.18 
 
 
290 aa  131  1.0000000000000001e-29  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0121617  n/a   
 
 
-
 
NC_009667  Oant_0026  LysR family transcriptional regulator  28.77 
 
 
295 aa  131  1.0000000000000001e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.615193  n/a   
 
 
-
 
NC_008825  Mpe_A0861  LysR family transcriptional regulator  24.83 
 
 
325 aa  130  2.0000000000000002e-29  Methylibium petroleiphilum PM1  Bacteria  normal  0.278142  normal 
 
 
-
 
NC_013223  Dret_2037  transcriptional regulator, LysR family  26.39 
 
 
304 aa  130  3e-29  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0223119  hitchhiker  0.000202643 
 
 
-
 
NC_013037  Dfer_0142  transcriptional regulator, LysR family  29.71 
 
 
297 aa  130  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A0687  LysR family transcriptional regulator  30.21 
 
 
311 aa  130  3e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.591422  n/a   
 
 
-
 
NC_007404  Tbd_1717  transcriptional regulator  28.28 
 
 
314 aa  130  4.0000000000000003e-29  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1993  transcriptional regulator, LysR family  26.96 
 
 
319 aa  129  5.0000000000000004e-29  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0114  LysR family transcriptional regulator  29.05 
 
 
294 aa  129  8.000000000000001e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2009  LysR family transcriptional regulator  30.58 
 
 
334 aa  128  9.000000000000001e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  0.476347  normal  0.474901 
 
 
-
 
CP001637  EcDH1_1501  transcriptional regulator, LysR family  30.8 
 
 
268 aa  127  1.0000000000000001e-28  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000205194  n/a   
 
 
-
 
NC_012793  GWCH70_1713  transcriptional regulator, LysR family  31.48 
 
 
304 aa  128  1.0000000000000001e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1615  LysR family transcriptional regulator  28.18 
 
 
299 aa  128  1.0000000000000001e-28  Burkholderia thailandensis E264  Bacteria  normal  0.979938  n/a   
 
 
-
 
NC_010001  Cphy_1783  MarR family transcriptional regulator  29.82 
 
 
302 aa  128  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000134706  n/a   
 
 
-
 
NC_009253  Dred_1443  LysR family transcriptional regulator  29.86 
 
 
303 aa  128  1.0000000000000001e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5945  transcriptional regulator, LysR family  25.75 
 
 
307 aa  128  1.0000000000000001e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.626175  normal 
 
 
-
 
NC_008463  PA14_71090  LysR family transcriptional regulator  27.4 
 
 
297 aa  128  1.0000000000000001e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1491  putative DNA-binding transcriptional regulator  30.8 
 
 
268 aa  127  1.0000000000000001e-28  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00000696654  normal  0.0147604 
 
 
-
 
NC_011080  SNSL254_A2392  putative DNA-binding transcriptional regulator  28.72 
 
 
287 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.26292  hitchhiker  0.00212314 
 
 
-
 
NC_011083  SeHA_C2436  putative DNA-binding transcriptional regulator  28.72 
 
 
287 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.0199714 
 
 
-
 
NC_011205  SeD_A2550  putative DNA-binding transcriptional regulator  28.72 
 
 
287 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00111574 
 
 
-
 
NC_011149  SeAg_B2348  putative DNA-binding transcriptional regulator  28.72 
 
 
287 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000261353  n/a   
 
 
-
 
NC_011094  SeSA_A2440  putative DNA-binding transcriptional regulator  28.72 
 
 
287 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.924518 
 
 
-
 
NC_010002  Daci_5712  LysR family transcriptional regulator  26.26 
 
 
301 aa  127  2.0000000000000002e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0283707 
 
 
-
 
NC_009441  Fjoh_2885  LysR family transcriptional regulator  30.26 
 
 
298 aa  127  2.0000000000000002e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0745668  n/a   
 
 
-
 
NC_008554  Sfum_3313  LysR family transcriptional regulator  28.91 
 
 
302 aa  127  2.0000000000000002e-28  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.600178  normal  0.236469 
 
 
-
 
NC_011312  VSAL_I0678  HTH-type transciptional regulator, LysR-family  27.97 
 
 
291 aa  127  3e-28  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0849029  n/a   
 
 
-
 
NC_003910  CPS_4699  LysR family substrate binding transcriptional regulator  31.93 
 
 
296 aa  127  3e-28  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0186  LysR family transcriptional regulator  27.43 
 
 
296 aa  127  3e-28  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000312054  normal 
 
 
-
 
NC_012912  Dd1591_2419  putative DNA-binding transcriptional regulator  27.02 
 
 
292 aa  127  3e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2375  LysR family transcriptional regulator  29.29 
 
 
303 aa  126  4.0000000000000003e-28  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6168  putative transcriptional regulator  26.9 
 
 
296 aa  126  4.0000000000000003e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  0.220915  n/a   
 
 
-
 
NC_007492  Pfl01_1184  LysR family transcriptional regulator  27.53 
 
 
308 aa  125  6e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.204393 
 
 
-
 
NC_008751  Dvul_1737  LysR family transcriptional regulator  28.42 
 
 
308 aa  125  6e-28  Desulfovibrio vulgaris DP4  Bacteria  normal  0.379475  normal  0.96466 
 
 
-
 
NC_013422  Hneap_0637  transcriptional regulator, LysR family  28.37 
 
 
312 aa  125  6e-28  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.0000713061  n/a   
 
 
-
 
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