| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0114 |
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| Symbol | |
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| ID | 4171796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 128929 |
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| End bp | 129813 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053113 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_659700 |
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| Protein GI | 109896445 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAC ATGCGCTTAG GGTTTTTCAT AGCGTTGCTC ATTTGGGCAG TTTCTCCCAA
GCGGCTGAGG CGCTTTATAT TAGCCAACCC GCGGTTTCAA AAGCACTCAA AGAGCTTGAA
CATCAACTGG GTATGCAACT CATTGAGCGA GCAGCTAAAG GAAAGAAGTT AGCTTTAACC
CAAGGTGGGC AGAGCTTGTT TAATCATGCC CGCAGTATTT TTGCGATTGA ACAAGCGGCA
CTTGAGGACG TAAGAGCACG CACAGGATTA AAACAAGGCA CTCTGGTTAT AGGCGCCAGC
ACCACTATAG CCGGTTACTG GCTAGCGCCT TATTTAGCGC GTTTTAATCA ACAATACCCG
AAAATTAAAG TAGAAGTGCA AGTAGCCAAT ACCGCGCAAA TTGAACAGGC ATTACTGGCC
TGCACCATTG ACTTTGCATT GGTGGAAGGG AGTGCAAGCG ACCCACACAT TAGCAGCCAG
CATTGGCAAG ACGACCCCAT GAGTATTGTG TATTCAAGCT CCTTGAAACC CGCAGATGAC
AAAGAAAAAT GGCTAAGCGA GCAACGCTGG TTGCTGCGGG AGCCTGGCTC GGGCACCCGG
CAAATGTCAT TTTCGCTATT GGCCGAACAA GGCATAGCAG TGAATGACAG TATGCAACTA
GGCAGTAATG AGGCGATAGC TCGTGGCGTC ACTCAAGGAA TGGGAGTGGC GTTATTGCCC
CAAGTTGTCA CCGAAGATTT ACTTGCGCTG AAAAAATTAA AGGTAATTTC TACTCAAAAA
AGCAAGCTGT TGTCTCGGCC TTTGTACCAG CTAGAATACC GTGACCGGCC ATCGTCACCG
GCAGCTAATG CCTTTGCGCA GATCTTGTAT CAGGCAGTTA ACTAA
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| Protein sequence | MNLHALRVFH SVAHLGSFSQ AAEALYISQP AVSKALKELE HQLGMQLIER AAKGKKLALT
QGGQSLFNHA RSIFAIEQAA LEDVRARTGL KQGTLVIGAS TTIAGYWLAP YLARFNQQYP
KIKVEVQVAN TAQIEQALLA CTIDFALVEG SASDPHISSQ HWQDDPMSIV YSSSLKPADD
KEKWLSEQRW LLREPGSGTR QMSFSLLAEQ GIAVNDSMQL GSNEAIARGV TQGMGVALLP
QVVTEDLLAL KKLKVISTQK SKLLSRPLYQ LEYRDRPSSP AANAFAQILY QAVN
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