More than 300 homologs were found in PanDaTox collection
for query gene Patl_2845 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_2845  formate dehydrogenase, subunit FdhD  100 
 
 
287 aa  588  1e-167  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4073  formate dehydrogenase family accessory protein FdhD  38.11 
 
 
280 aa  179  2.9999999999999997e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.110434  normal  0.0860258 
 
 
-
 
NC_013159  Svir_12240  formate dehydrogenase family accessory protein FdhD  38.85 
 
 
272 aa  160  2e-38  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3157  formate dehydrogenase family accessory protein FdhD  36.24 
 
 
281 aa  154  1e-36  Spirosoma linguale DSM 74  Bacteria  normal  0.630603  normal 
 
 
-
 
NC_013037  Dfer_2665  formate dehydrogenase family accessory protein FdhD  34.39 
 
 
275 aa  154  2e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4019  formate dehydrogenase family accessory protein FdhD  38.11 
 
 
288 aa  154  2e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3339  formate dehydrogenase family accessory protein FdhD  36.49 
 
 
297 aa  151  1e-35  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.224084 
 
 
-
 
NC_009767  Rcas_4385  formate dehydrogenase family accessory protein FdhD  37.41 
 
 
288 aa  151  1e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2115  formate dehydrogenase family accessory protein FdhD  35.34 
 
 
273 aa  150  2e-35  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_0406  formate dehydrogenase family accessory protein FdhD  35.07 
 
 
284 aa  150  2e-35  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1335  formate dehydrogenase family accessory protein FdhD  34.97 
 
 
289 aa  150  2e-35  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000543766 
 
 
-
 
NC_009338  Mflv_2593  formate dehydrogenase accessory protein  37.11 
 
 
278 aa  149  5e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4473  formate dehydrogenase family accessory protein FdhD  38.06 
 
 
276 aa  148  1.0000000000000001e-34  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.979472  n/a   
 
 
-
 
NC_008148  Rxyl_0145  formate dehydrogenase family accessory protein FdhD  34.63 
 
 
289 aa  147  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2698  formate dehydrogenase, subunit FdhD  38.43 
 
 
283 aa  147  2.0000000000000003e-34  Nocardioides sp. JS614  Bacteria  normal  0.0902014  n/a   
 
 
-
 
NC_007333  Tfu_1624  formate dehydrogenase accessory protein  36.84 
 
 
275 aa  146  4.0000000000000006e-34  Thermobifida fusca YX  Bacteria  normal  0.199677  n/a   
 
 
-
 
NC_008726  Mvan_4033  formate dehydrogenase accessory protein  36.27 
 
 
287 aa  145  8.000000000000001e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.681532  normal  0.294632 
 
 
-
 
NC_011886  Achl_3467  formate dehydrogenase family accessory protein FdhD  36.62 
 
 
294 aa  144  1e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_4114  formate dehydrogenase family accessory protein FdhD  35.09 
 
 
293 aa  144  1e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1855  formate dehydrogenase family accessory protein FdhD  33.69 
 
 
275 aa  144  1e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.121584  normal  0.0332237 
 
 
-
 
NC_011726  PCC8801_0758  formate dehydrogenase family accessory protein FdhD  34.26 
 
 
299 aa  144  2e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0784  formate dehydrogenase family accessory protein FdhD  34.26 
 
 
299 aa  144  2e-33  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0802  formate dehydrogenase family accessory protein FdhD  37.72 
 
 
309 aa  144  2e-33  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3047  formate dehydrogenase family accessory protein FdhD  33.91 
 
 
294 aa  142  5e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3534  formate dehydrogenase family accessory protein FdhD  35.69 
 
 
284 aa  142  9e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1157  formate dehydrogenase family accessory protein FdhD  34.71 
 
 
274 aa  140  1.9999999999999998e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_15020  formate dehydrogenase family accessory protein FdhD  35.69 
 
 
281 aa  139  3.9999999999999997e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.503102  normal 
 
 
-
 
NC_008554  Sfum_0034  formate dehydrogenase family accessory protein FdhD  34.04 
 
 
267 aa  139  6e-32  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.190286  normal  0.450468 
 
 
-
 
NC_009565  TBFG_12913  formate dehydrogenase accessory protein  35.37 
 
 
276 aa  137  1e-31  Mycobacterium tuberculosis F11  Bacteria  normal  0.167876  normal 
 
 
-
 
NC_009077  Mjls_3577  formate dehydrogenase accessory protein  35.96 
 
 
274 aa  137  2e-31  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3572  formate dehydrogenase accessory protein  35.96 
 
 
274 aa  137  2e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1914  formate dehydrogenase family accessory protein FdhD  35.11 
 
 
285 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  0.84446  hitchhiker  0.0000450272 
 
 
-
 
NC_013131  Caci_0829  formate dehydrogenase family accessory protein FdhD  34.45 
 
 
296 aa  137  2e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  hitchhiker  0.00158751 
 
 
-
 
NC_008705  Mkms_3645  formate dehydrogenase accessory protein  35.96 
 
 
274 aa  137  2e-31  Mycobacterium sp. KMS  Bacteria  normal  normal  0.259742 
 
 
-
 
NC_013947  Snas_0300  formate dehydrogenase family accessory protein FdhD  35.03 
 
 
268 aa  136  3.0000000000000003e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2346  formate dehydrogenase family accessory protein FdhD  34.15 
 
 
284 aa  134  9.999999999999999e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.36394  n/a   
 
 
-
 
NC_013441  Gbro_3682  formate dehydrogenase subunit FdhD  34.8 
 
 
279 aa  133  3e-30  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2123  formate dehydrogenase, subunit FdhD  35.29 
 
 
319 aa  132  6e-30  Psychromonas ingrahamii 37  Bacteria  normal  0.951323  hitchhiker  0.00982991 
 
 
-
 
NC_014212  Mesil_2130  formate dehydrogenase family accessory protein FdhD  34.84 
 
 
283 aa  131  1.0000000000000001e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.455912  normal  0.581272 
 
 
-
 
NC_013595  Sros_1325  formate dehydrogenase  34.27 
 
 
282 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.201918 
 
 
-
 
NC_013440  Hoch_0065  formate dehydrogenase family accessory protein FdhD  34.95 
 
 
277 aa  130  2.0000000000000002e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.255284 
 
 
-
 
NC_011886  Achl_0919  formate dehydrogenase family accessory protein FdhD  36.14 
 
 
292 aa  130  2.0000000000000002e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008010  Dgeo_2744  formate dehydrogenase family accessory protein FdhD  34.65 
 
 
251 aa  130  2.0000000000000002e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5379  formate dehydrogenase family accessory protein FdhD  33.68 
 
 
248 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0597745  normal 
 
 
-
 
NC_009921  Franean1_2306  formate dehydrogenase accessory protein  34.12 
 
 
286 aa  129  6e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0877  formate dehydrogenase family accessory protein FdhD  32.52 
 
 
288 aa  129  7.000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0873  formate dehydrogenase family accessory protein FdhD  32.28 
 
 
288 aa  128  1.0000000000000001e-28  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_1320  formate dehydrogenase family accessory protein FdhD  32.16 
 
 
254 aa  124  2e-27  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_007760  Adeh_0826  formate dehydrogenase family accessory protein FdhD  32.52 
 
 
288 aa  123  3e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_4145  formate dehydrogenase family accessory protein FdhD  34.6 
 
 
321 aa  123  3e-27  Opitutus terrae PB90-1  Bacteria  normal  normal  0.197477 
 
 
-
 
NC_013172  Bfae_29960  formate dehydrogenase family accessory protein FdhD  34 
 
 
290 aa  121  9.999999999999999e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_0639  formate dehydrogenase family accessory protein FdhD  31.21 
 
 
255 aa  119  7e-26  Sulfolobus solfataricus 98/2  Archaea  normal  0.444789  n/a   
 
 
-
 
NC_008578  Acel_0667  formate dehydrogenase, subunit FdhD  31.71 
 
 
320 aa  107  2e-22  Acidothermus cellulolyticus 11B  Bacteria  normal  0.187577  normal 
 
 
-
 
NC_012850  Rleg_3924  formate dehydrogenase accessory protein  31.09 
 
 
274 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.789424  normal 
 
 
-
 
NC_007947  Mfla_0719  formate dehydrogenase family accessory protein FdhD  36.26 
 
 
278 aa  103  4e-21  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2149  formate dehydrogenase family accessory protein FdhD  30.66 
 
 
282 aa  101  1e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1343  formate dehydrogenase accessory protein  28.83 
 
 
263 aa  101  2e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_4096  formate dehydrogenase family accessory protein FdhD  29.92 
 
 
274 aa  99  9e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3635  formate dehydrogenase accessory protein  29.59 
 
 
274 aa  97.4  2e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222739 
 
 
-
 
NC_010084  Bmul_0582  formate dehydrogenase family accessory protein FdhD  41.42 
 
 
274 aa  96.3  6e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0444  formate dehydrogenase accessory protein  33.89 
 
 
287 aa  94.7  2e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0466  formate dehydrogenase accessory protein  29.43 
 
 
262 aa  94.7  2e-18  Geobacillus sp. WCH70  Bacteria  normal  0.276769  n/a   
 
 
-
 
NC_007519  Dde_3516  formate dehydrogenase family accessory protein FdhD  27.4 
 
 
294 aa  93.2  5e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0829  formate dehydrogenase family accessory protein FdhD  50 
 
 
265 aa  92.8  6e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0159111  n/a   
 
 
-
 
NC_007493  RSP_1081  formate dehydrogenase accessory protein  29.39 
 
 
271 aa  92.8  6e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1390  formate dehydrogenase accessory protein FdhD  32.97 
 
 
306 aa  92  9e-18  Methylococcus capsulatus str. Bath  Bacteria  normal  0.780868  n/a   
 
 
-
 
NC_010159  YpAngola_A3771  formate dehydrogenase accessory protein  29.12 
 
 
274 aa  92  1e-17  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0036  formate dehydrogenase accessory protein  29.12 
 
 
274 aa  92  1e-17  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1923  formate dehydrogenase family accessory protein FdhD  27.27 
 
 
280 aa  91.7  1e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3819  formate dehydrogenase accessory protein  36.67 
 
 
269 aa  91.7  1e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.934196  n/a   
 
 
-
 
NC_008322  Shewmr7_0103  formate dehydrogenase accessory protein  33.33 
 
 
278 aa  91.7  1e-17  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0108  formate dehydrogenase accessory protein  34.07 
 
 
278 aa  91.7  1e-17  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2742  formate dehydrogenase accessory protein  29.89 
 
 
271 aa  92  1e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.455642 
 
 
-
 
NC_011663  Sbal223_0110  formate dehydrogenase accessory protein  33.7 
 
 
278 aa  91.3  2e-17  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3374  formate dehydrogenase family accessory protein FdhD  29.08 
 
 
260 aa  90.9  2e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0111  formate dehydrogenase accessory protein  33.7 
 
 
278 aa  91.3  2e-17  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0106  formate dehydrogenase accessory protein  33.7 
 
 
278 aa  91.3  2e-17  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_2122  formate dehydrogenase family accessory protein FdhD  29.5 
 
 
259 aa  90.5  3e-17  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.545765  normal 
 
 
-
 
NC_009708  YpsIP31758_4120  formate dehydrogenase accessory protein  28.77 
 
 
274 aa  90.1  4e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0699  formate dehydrogenase accessory protein FdhD  34.27 
 
 
274 aa  90.1  4e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0108  formate dehydrogenase accessory protein  32.79 
 
 
278 aa  90.1  4e-17  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0389  formate dehydrogenase family accessory protein FdhD  39.64 
 
 
273 aa  90.1  4e-17  Burkholderia phymatum STM815  Bacteria  normal  normal  0.318407 
 
 
-
 
NC_007510  Bcep18194_A6044  formate dehydrogenase, subunit FdhD  39.64 
 
 
278 aa  89.7  5e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00469  formate dehydrogenase accessory protein  36.96 
 
 
273 aa  89.4  7e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_010681  Bphyt_0665  formate dehydrogenase family accessory protein FdhD  32.8 
 
 
279 aa  89  8e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.223999  normal 
 
 
-
 
NC_010508  Bcenmc03_2744  formate dehydrogenase family accessory protein FdhD  39.64 
 
 
284 aa  88.2  1e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.135991  normal 
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  32.04 
 
 
277 aa  88.6  1e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0569  formate dehydrogenase family accessory protein FdhD  33.8 
 
 
274 aa  88.2  1e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2105  formate dehydrogenase family accessory protein FdhD  39.64 
 
 
284 aa  88.2  1e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.719105  n/a   
 
 
-
 
NC_008542  Bcen2424_2717  formate dehydrogenase family accessory protein FdhD  39.64 
 
 
284 aa  88.2  1e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.546813  n/a   
 
 
-
 
NC_009636  Smed_2896  formate dehydrogenase accessory protein  35.56 
 
 
302 aa  87.8  2e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.805678  normal 
 
 
-
 
NC_004347  SO_0107  formate dehydrogenase accessory protein  32.62 
 
 
278 aa  87  3e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009074  BURPS668_0684  formate dehydrogenase accessory protein FdhD  33.8 
 
 
274 aa  87  3e-16  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0201  formate dehydrogenase accessory protein  33.8 
 
 
274 aa  87  3e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0994  formate dehydrogenase family accessory protein FdhD  33.68 
 
 
295 aa  87  3e-16  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.506851  normal 
 
 
-
 
NC_009428  Rsph17025_2852  formate dehydrogenase accessory protein  35.2 
 
 
271 aa  87  3e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.743331  normal  0.675793 
 
 
-
 
NC_010498  EcSMS35_4282  formate dehydrogenase accessory protein  32.97 
 
 
267 aa  87.4  3e-16  Escherichia coli SMS-3-5  Bacteria  normal  0.715148  normal 
 
 
-
 
NC_009080  BMA10247_2414  formate dehydrogenase accessory protein  33.8 
 
 
274 aa  87  3e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2635  formate dehydrogenase family accessory protein FdhD  39.05 
 
 
274 aa  87.4  3e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.481847 
 
 
-
 
NC_008785  BMASAVP1_A2744  formate dehydrogenase accessory protein  33.8 
 
 
274 aa  87  3e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>