Gene Shewmr4_0108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0108 
Symbol 
ID4250987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp122191 
End bp123027 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content51% 
IMG OID638116651 
Productformate dehydrogenase accessory protein 
Protein accessionYP_732246 
Protein GI113968453 
COG category[C] Energy production and conversion 
COG ID[COG1526] Uncharacterized protein required for formate dehydrogenase activity 
TIGRFAM ID[TIGR00129] formate dehydrogenase family accessory protein FdhD 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATATC ATTCACACGC CGTGGTTACT GAAAGAAAGG TGACCCTTTT AGAACAGGGA 
CAGGCCTCAG AGTTAACCGA TTATGTGGCT AACGAGGTGC GAGTGGCGCT GGTGTATAAC
GGCATCGCCC ACACTGTGAT GCTCGCCAGC CCTGAAAATC TCGAGGAGTT TGCCATTGGC
TTTACCTTGT CGGAGCGGAT TGTTTCCCAT GTGAATGAAA TCAAAGGGGT GGATCTGGAG
TTCACCCCCG AAGGCGTGCT CATTCAGGTG GAAATCACCC AAAGATGCTT TATGGAACTC
AAGCAGCAGC GGCGCAATAT GGCGGGGCGC ACGGGCTGTG GACTCTGTGG TGTGGCGCAG
CTAGAAGAGG CGGTTAAACC CGTTATTCGC GTCGACTCGG ACGCCAGATT TAATATCGAT
CATCTGCAGC TCGCCCTTGA GCAGATCAAA GAGAATCAAC ATCACTTTAA GCTCACGGGT
GCAACCCACG CCGCCATGGG TTTAGACGAG GAAGGACAAA TCATCGCCGC CTTTGAGGAC
ATAGGGCGGC ACATTGCACT GGATAAATTA ATCGGTGGAT TTTCAATGCG TCAGGCACAG
CGACCTGTCG CCGTGTTGCT CACCAGCCGC GCCAGTTTTG AAATGGTGCA AAAGGCCGCC
AGTGCCAATA TCCAAATTCT GTTTGCTATG TCCGCCGTGA CTTCACTGGC GTTGGAATTA
GCAGAGAAAA GCAACATCAC GCTTATCGGT TTTTGTCGTA ATGGCAGAGC CACGCTCTAC
ACCCATAGTT ATCGACTGTT GGGGATAAAT CGTGGCTGTT TAGCGAAAGC CATCTAA
 
Protein sequence
MEYHSHAVVT ERKVTLLEQG QASELTDYVA NEVRVALVYN GIAHTVMLAS PENLEEFAIG 
FTLSERIVSH VNEIKGVDLE FTPEGVLIQV EITQRCFMEL KQQRRNMAGR TGCGLCGVAQ
LEEAVKPVIR VDSDARFNID HLQLALEQIK ENQHHFKLTG ATHAAMGLDE EGQIIAAFED
IGRHIALDKL IGGFSMRQAQ RPVAVLLTSR ASFEMVQKAA SANIQILFAM SAVTSLALEL
AEKSNITLIG FCRNGRATLY THSYRLLGIN RGCLAKAI