Gene Rcas_4385 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4385 
Symbol 
ID5541898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5636811 
End bp5637677 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content64% 
IMG OID640896485 
Productformate dehydrogenase family accessory protein FdhD 
Protein accessionYP_001434421 
Protein GI156744292 
COG category[C] Energy production and conversion 
COG ID[COG1526] Uncharacterized protein required for formate dehydrogenase activity 
TIGRFAM ID[TIGR00129] formate dehydrogenase family accessory protein FdhD 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCACCC AACCCAACGT GCAACGGCGC ACTGTCATTC GGGTGCGCGA CGGACAACTG 
ACGCGCGACC GGGATACGCT GGTCGTCGAA GAACCGCTGG AGATTCGCCT GGCGCTCCAC
ACTGCCGATG GCGTCCACCT CATTCCGCTG ACGACGACCC TGCGCACGCC GGGCGCAGAC
GTTGAACTGG CTGCCGGGTT TCTGTTCAGC GAAGGCGTCG TGCGTGAGCG GAACGACATC
GCCACCATTC GCGCCTGCAC CGATCCCGAC ATCGACGAAG AGGAGGCGCG CTTCAATACC
CTCACGGTTG ATCTGCGTCC GGGGGCGCAA CCCGACCTGA CGCGCGCTCG ACGCCTGTTT
TACGTCTCGT CGTCGTGCGG CGTCTGCGGC AAGGCGTCGC TCGATGCGTT GCGCACTCGC
GGCTGTGTTC CGCTGCCCGA TGACGATGGA GTGCGCATTT CGCTTTCGGT GCTGGCAGGC
ATGGATGCGG CGCTTCGTCG GGCGCAGGCG CTCTTCCATA AAACCGGCGG TCTTCATGCC
GCTGCGCTGT TTGCCGTCGA TGGCGCGCTG CTCGCATTGC ACGAGGACAT TGGTCGCCAC
AATGCGGTGG ACAAACTGAT CGGCGCGCAC CTGCTCCAGG GGCGCCTGGC TGCGTTGACC
CGGTCGATCC TGTTGGTCAG CGGGCGCGCC GGGTTCGAGA TTGTGCAGAA AGCGCTGATG
GCGCGCATAC CAATCGTTGC GGCGGTTGGC GCGCCATCGA CCCTGGCAGT CACTCTGGCG
CAGCAGTTCA ACATGACCCT GATCGGATTC CTGCGCGGTG CGTCGTGCAA TGTGTACGCC
GGTGAGCAGC GAATCTCAAT AGAGTGA
 
Protein sequence
MLTQPNVQRR TVIRVRDGQL TRDRDTLVVE EPLEIRLALH TADGVHLIPL TTTLRTPGAD 
VELAAGFLFS EGVVRERNDI ATIRACTDPD IDEEEARFNT LTVDLRPGAQ PDLTRARRLF
YVSSSCGVCG KASLDALRTR GCVPLPDDDG VRISLSVLAG MDAALRRAQA LFHKTGGLHA
AALFAVDGAL LALHEDIGRH NAVDKLIGAH LLQGRLAALT RSILLVSGRA GFEIVQKALM
ARIPIVAAVG APSTLAVTLA QQFNMTLIGF LRGASCNVYA GEQRISIE