More than 300 homologs were found in PanDaTox collection
for query gene Dde_3516 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3516  formate dehydrogenase family accessory protein FdhD  100 
 
 
294 aa  602  1.0000000000000001e-171  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0034  formate dehydrogenase family accessory protein FdhD  38.43 
 
 
267 aa  176  6e-43  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.190286  normal  0.450468 
 
 
-
 
NC_008148  Rxyl_0145  formate dehydrogenase family accessory protein FdhD  37.46 
 
 
289 aa  137  3.0000000000000003e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1325  formate dehydrogenase  34.06 
 
 
282 aa  136  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.201918 
 
 
-
 
NC_013159  Svir_12240  formate dehydrogenase family accessory protein FdhD  37.8 
 
 
272 aa  135  6.0000000000000005e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0758  formate dehydrogenase family accessory protein FdhD  33.7 
 
 
299 aa  135  7.000000000000001e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_2665  formate dehydrogenase family accessory protein FdhD  32.85 
 
 
275 aa  135  8e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0784  formate dehydrogenase family accessory protein FdhD  33.7 
 
 
299 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0300  formate dehydrogenase family accessory protein FdhD  33.09 
 
 
268 aa  133  3.9999999999999996e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12913  formate dehydrogenase accessory protein  34.93 
 
 
276 aa  132  7.999999999999999e-30  Mycobacterium tuberculosis F11  Bacteria  normal  0.167876  normal 
 
 
-
 
NC_012791  Vapar_3020  formate dehydrogenase family accessory protein FdhD  34.1 
 
 
278 aa  130  2.0000000000000002e-29  Variovorax paradoxus S110  Bacteria  normal  0.848082  n/a   
 
 
-
 
NC_014210  Ndas_4114  formate dehydrogenase family accessory protein FdhD  34.84 
 
 
293 aa  131  2.0000000000000002e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3047  formate dehydrogenase family accessory protein FdhD  33.7 
 
 
294 aa  131  2.0000000000000002e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1537  formate dehydrogenase family accessory protein FdhD  34.13 
 
 
257 aa  130  3e-29  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000559479  n/a   
 
 
-
 
NC_009664  Krad_3339  formate dehydrogenase family accessory protein FdhD  35.87 
 
 
297 aa  129  7.000000000000001e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.224084 
 
 
-
 
NC_011662  Tmz1t_0200  formate dehydrogenase family accessory protein FdhD  36.4 
 
 
272 aa  129  8.000000000000001e-29  Thauera sp. MZ1T  Bacteria  normal  0.754057  n/a   
 
 
-
 
NC_013739  Cwoe_5379  formate dehydrogenase family accessory protein FdhD  36.19 
 
 
248 aa  127  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.0597745  normal 
 
 
-
 
NC_013510  Tcur_3534  formate dehydrogenase family accessory protein FdhD  34.92 
 
 
284 aa  127  2.0000000000000002e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3577  formate dehydrogenase accessory protein  34.05 
 
 
274 aa  126  3e-28  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3572  formate dehydrogenase accessory protein  34.05 
 
 
274 aa  126  3e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3645  formate dehydrogenase accessory protein  34.05 
 
 
274 aa  126  3e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.259742 
 
 
-
 
NC_013946  Mrub_1914  formate dehydrogenase family accessory protein FdhD  34.07 
 
 
285 aa  126  4.0000000000000003e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.84446  hitchhiker  0.0000450272 
 
 
-
 
NC_013132  Cpin_4073  formate dehydrogenase family accessory protein FdhD  34.05 
 
 
280 aa  126  4.0000000000000003e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.110434  normal  0.0860258 
 
 
-
 
NC_008541  Arth_0802  formate dehydrogenase family accessory protein FdhD  33.71 
 
 
309 aa  126  5e-28  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4033  formate dehydrogenase accessory protein  34.26 
 
 
287 aa  125  6e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.681532  normal  0.294632 
 
 
-
 
NC_011886  Achl_0919  formate dehydrogenase family accessory protein FdhD  35.51 
 
 
292 aa  125  9e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
CP001800  Ssol_0639  formate dehydrogenase family accessory protein FdhD  32.77 
 
 
255 aa  124  1e-27  Sulfolobus solfataricus 98/2  Archaea  normal  0.444789  n/a   
 
 
-
 
NC_014212  Mesil_2130  formate dehydrogenase family accessory protein FdhD  36.09 
 
 
283 aa  124  2e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  0.455912  normal  0.581272 
 
 
-
 
NC_011891  A2cp1_0877  formate dehydrogenase family accessory protein FdhD  33.96 
 
 
288 aa  124  2e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3467  formate dehydrogenase family accessory protein FdhD  35.71 
 
 
294 aa  124  2e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_0829  formate dehydrogenase family accessory protein FdhD  32 
 
 
296 aa  124  3e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  hitchhiker  0.00158751 
 
 
-
 
NC_009523  RoseRS_4019  formate dehydrogenase family accessory protein FdhD  31.25 
 
 
288 aa  122  5e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0873  formate dehydrogenase family accessory protein FdhD  34.33 
 
 
288 aa  122  5e-27  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2744  formate dehydrogenase family accessory protein FdhD  35.25 
 
 
251 aa  122  6e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4282  formate dehydrogenase accessory protein  31.5 
 
 
267 aa  120  1.9999999999999998e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.715148  normal 
 
 
-
 
NC_007973  Rmet_0556  formate dehydrogenase accessory protein  32.23 
 
 
281 aa  121  1.9999999999999998e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.152789  normal  0.415785 
 
 
-
 
NC_009832  Spro_0082  formate dehydrogenase accessory protein  33.99 
 
 
278 aa  120  1.9999999999999998e-26  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03780  formate dehydrogenase accessory protein  31.62 
 
 
277 aa  120  3e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03729  hypothetical protein  31.62 
 
 
277 aa  120  3e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_1320  formate dehydrogenase family accessory protein FdhD  29.18 
 
 
254 aa  120  3e-26  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_009767  Rcas_4385  formate dehydrogenase family accessory protein FdhD  31.74 
 
 
288 aa  120  3e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4425  formate dehydrogenase accessory protein  31.62 
 
 
266 aa  119  3.9999999999999996e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4374  formate dehydrogenase accessory protein  31.62 
 
 
266 aa  119  3.9999999999999996e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2593  formate dehydrogenase accessory protein  34.33 
 
 
278 aa  120  3.9999999999999996e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A4123  formate dehydrogenase accessory protein  31.62 
 
 
266 aa  119  3.9999999999999996e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4089  formate dehydrogenase family accessory protein FdhD  31.62 
 
 
277 aa  119  4.9999999999999996e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4122  formate dehydrogenase accessory protein  31.62 
 
 
277 aa  119  4.9999999999999996e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5346  formate dehydrogenase accessory protein  31.62 
 
 
277 aa  119  4.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3157  formate dehydrogenase family accessory protein FdhD  33.71 
 
 
281 aa  119  4.9999999999999996e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.630603  normal 
 
 
-
 
NC_007347  Reut_A0620  formate dehydrogenase accessory protein  32.58 
 
 
288 aa  119  6e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.979772  n/a   
 
 
-
 
NC_013169  Ksed_15020  formate dehydrogenase family accessory protein FdhD  31.71 
 
 
281 aa  119  6e-26  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.503102  normal 
 
 
-
 
NC_014158  Tpau_2346  formate dehydrogenase family accessory protein FdhD  34.86 
 
 
284 aa  119  6e-26  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.36394  n/a   
 
 
-
 
NC_010159  YpAngola_A3771  formate dehydrogenase accessory protein  33.07 
 
 
274 aa  119  7.999999999999999e-26  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  32.23 
 
 
277 aa  118  9.999999999999999e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0034  formate dehydrogenase family accessory protein FdhD  33.2 
 
 
280 aa  118  9.999999999999999e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.663186 
 
 
-
 
NC_014151  Cfla_2115  formate dehydrogenase family accessory protein FdhD  34.56 
 
 
273 aa  117  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1855  formate dehydrogenase family accessory protein FdhD  33.33 
 
 
275 aa  117  1.9999999999999998e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  0.121584  normal  0.0332237 
 
 
-
 
NC_010465  YPK_0036  formate dehydrogenase accessory protein  32.55 
 
 
274 aa  117  1.9999999999999998e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_4120  formate dehydrogenase accessory protein  32.42 
 
 
274 aa  117  1.9999999999999998e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0108  formate dehydrogenase accessory protein  31.6 
 
 
278 aa  117  3e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0806  formate dehydrogenase accessory protein  34.93 
 
 
276 aa  116  3.9999999999999997e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3682  formate dehydrogenase subunit FdhD  32.75 
 
 
279 aa  116  3.9999999999999997e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0103  formate dehydrogenase accessory protein  31.48 
 
 
278 aa  116  5e-25  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0057  formate dehydrogenase accessory protein  33.2 
 
 
272 aa  116  5e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2076  formate dehydrogenase, subunit FdhD  28.78 
 
 
263 aa  116  6e-25  Geobacter metallireducens GS-15  Bacteria  hitchhiker  9.82479e-16  normal 
 
 
-
 
NC_009921  Franean1_2306  formate dehydrogenase accessory protein  35.92 
 
 
286 aa  116  6e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0108  formate dehydrogenase accessory protein  31.48 
 
 
278 aa  115  6e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1157  formate dehydrogenase family accessory protein FdhD  35.21 
 
 
274 aa  116  6e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0073  formate dehydrogenase accessory protein  33.09 
 
 
277 aa  115  6.9999999999999995e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29960  formate dehydrogenase family accessory protein FdhD  33.45 
 
 
290 aa  115  8.999999999999998e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2355  formate dehydrogenase family accessory protein FdhD  31.1 
 
 
283 aa  115  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4365  formate dehydrogenase accessory protein  30.4 
 
 
278 aa  114  2.0000000000000002e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4319  formate dehydrogenase accessory protein  30.4 
 
 
278 aa  114  2.0000000000000002e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.25899  normal  0.917498 
 
 
-
 
NC_011831  Cagg_1335  formate dehydrogenase family accessory protein FdhD  30.53 
 
 
289 aa  114  3e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000543766 
 
 
-
 
NC_011146  Gbem_2264  formate dehydrogenase family accessory protein FdhD  29.96 
 
 
468 aa  113  3e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4473  formate dehydrogenase family accessory protein FdhD  33.08 
 
 
276 aa  114  3e-24  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.979472  n/a   
 
 
-
 
NC_004347  SO_0107  formate dehydrogenase accessory protein  31.34 
 
 
278 aa  113  4.0000000000000004e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_3264  formate dehydrogenase family accessory protein FdhD  31.5 
 
 
291 aa  113  4.0000000000000004e-24  Methylobacterium extorquens PA1  Bacteria  normal  0.859238  normal  0.14649 
 
 
-
 
NC_011149  SeAg_B4274  formate dehydrogenase accessory protein  30.04 
 
 
278 aa  112  5e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2123  formate dehydrogenase, subunit FdhD  30.4 
 
 
319 aa  112  5e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.951323  hitchhiker  0.00982991 
 
 
-
 
NC_011205  SeD_A4430  formate dehydrogenase accessory protein  30.04 
 
 
278 aa  112  5e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.141571  normal 
 
 
-
 
NC_011757  Mchl_3588  formate dehydrogenase family accessory protein FdhD  32.82 
 
 
291 aa  112  6e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_2060  formate dehydrogenase family accessory protein FdhD  29.21 
 
 
262 aa  112  6e-24  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.0000863556  n/a   
 
 
-
 
NC_007760  Adeh_0826  formate dehydrogenase family accessory protein FdhD  34.7 
 
 
288 aa  112  8.000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3088  formate dehydrogenase accessory protein  33.58 
 
 
278 aa  112  8.000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1958  formate dehydrogenase family accessory protein FdhD  29.96 
 
 
468 aa  112  9e-24  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010717  PXO_00469  formate dehydrogenase accessory protein  30.37 
 
 
273 aa  112  9e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_007333  Tfu_1624  formate dehydrogenase accessory protein  35.36 
 
 
275 aa  111  1.0000000000000001e-23  Thermobifida fusca YX  Bacteria  normal  0.199677  n/a   
 
 
-
 
NC_011894  Mnod_0254  formate dehydrogenase family accessory protein FdhD  29.92 
 
 
299 aa  111  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0343903  n/a   
 
 
-
 
NC_007644  Moth_2175  formate dehydrogenase family accessory protein FdhD  27.65 
 
 
260 aa  111  1.0000000000000001e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.145342 
 
 
-
 
NC_011773  BCAH820_3578  formate dehydrogenase accessory protein  28.84 
 
 
265 aa  112  1.0000000000000001e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_0719  formate dehydrogenase family accessory protein FdhD  32.22 
 
 
278 aa  111  1.0000000000000001e-23  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4252  formate dehydrogenase accessory protein  30.31 
 
 
278 aa  112  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.720037 
 
 
-
 
NC_013440  Hoch_0065  formate dehydrogenase family accessory protein FdhD  31.58 
 
 
277 aa  111  2.0000000000000002e-23  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.255284 
 
 
-
 
NC_011725  BCB4264_A3678  formate dehydrogenase accessory protein  29.45 
 
 
265 aa  111  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  0.688402  n/a   
 
 
-
 
NC_009436  Ent638_4083  formate dehydrogenase accessory protein  30.12 
 
 
278 aa  110  3e-23  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1654  formate dehydrogenase family accessory protein FdhD  30.65 
 
 
282 aa  110  3e-23  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1062  formate dehydrogenase, subunit FdhD  30.25 
 
 
479 aa  110  3e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0656292 
 
 
-
 
NC_011206  Lferr_1352  formate dehydrogenase family accessory protein FdhD  30.65 
 
 
282 aa  110  3e-23  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4159  formate dehydrogenase accessory protein  32.06 
 
 
277 aa  110  3e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
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