Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3020 |
Symbol | |
ID | 7973740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3178595 |
End bp | 3179431 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644793604 |
Product | formate dehydrogenase family accessory protein FdhD |
Protein accession | YP_002944905 |
Protein GI | 239815995 |
COG category | [C] Energy production and conversion |
COG ID | [COG1526] Uncharacterized protein required for formate dehydrogenase activity |
TIGRFAM ID | [TIGR00129] formate dehydrogenase family accessory protein FdhD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.848082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACCTGT CCGACGTACC GCTGCGCCCC GGAAGCGCGG AACTTCTGCC CGTGCGCGGC GTGCGCGCGC TCCAGGCCTT CGACAACCGC GACTGGGTGG CCGTGGAGGT GCCGGTCGCG CTGGAGTTCA ACGGCATTGC GCATGCCGTG ATGCTTGCAA CGCCCACCGA CCTGGCCGAC TTCGCGCTGG GCTTCGCGCT CAGCGAGGGC ATCCTGCTCG GGCGCAATGA GCTCTACGGC GTCGAGGAAG CATACGCGCC CGAGGGCATC ACCCTCAAGC TCGACGTGGC AAGCGCGGCC TTCGCGCGGC TGAAGGCGCG CCGCCGCTCG ATGGCCGGAC GCACGGGCTG CGGCCTGTGC GGCACGGAGA GCCTGGCGCA TGTCACGCGT GCGCTGCCGC CGTTGCCCGA GGGCCCGGCG CTTTCGACCC GCGCTGTCGC GCGCGGCATG CGGGAGCTGG CATCGATGCA GGTGCTGCAG AAGGTCACCG GCGCCGTGCA CGCGGCGGCC TGGTGCAGCG CCGAGGGCGA GGCCCTGCTG GTGCGCGAGG ACGTCGGCCG CCACAACGCG CTCGACAAGC TCGTCGGCGC GCTCGCAAGA AGCAGTGTGC CCGCCTCCAC CGGCTTCATC GCGGTGACCA GCCGCGCGAG TTTCGAGATG GTGCAGAAAA CCGTCGCGGC CCGCGTGCCG CTGCTGGCCG CCGTTTCGGC CTCGACCTCG CTGGCCACGG CCATTGCAGA GGACGCGGGC CTGACGCTGG CGGGCTTCGT GCGCGGCGAC GACCTGGTCA TCTACACCCA CCCGTGGCGG CTCAACGGCC TGCCCGCCAA CGCCTGA
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Protein sequence | MNLSDVPLRP GSAELLPVRG VRALQAFDNR DWVAVEVPVA LEFNGIAHAV MLATPTDLAD FALGFALSEG ILLGRNELYG VEEAYAPEGI TLKLDVASAA FARLKARRRS MAGRTGCGLC GTESLAHVTR ALPPLPEGPA LSTRAVARGM RELASMQVLQ KVTGAVHAAA WCSAEGEALL VREDVGRHNA LDKLVGALAR SSVPASTGFI AVTSRASFEM VQKTVAARVP LLAAVSASTS LATAIAEDAG LTLAGFVRGD DLVIYTHPWR LNGLPANA
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