Gene Vapar_3020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3020 
Symbol 
ID7973740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3178595 
End bp3179431 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content72% 
IMG OID644793604 
Productformate dehydrogenase family accessory protein FdhD 
Protein accessionYP_002944905 
Protein GI239815995 
COG category[C] Energy production and conversion 
COG ID[COG1526] Uncharacterized protein required for formate dehydrogenase activity 
TIGRFAM ID[TIGR00129] formate dehydrogenase family accessory protein FdhD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.848082 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACCTGT CCGACGTACC GCTGCGCCCC GGAAGCGCGG AACTTCTGCC CGTGCGCGGC 
GTGCGCGCGC TCCAGGCCTT CGACAACCGC GACTGGGTGG CCGTGGAGGT GCCGGTCGCG
CTGGAGTTCA ACGGCATTGC GCATGCCGTG ATGCTTGCAA CGCCCACCGA CCTGGCCGAC
TTCGCGCTGG GCTTCGCGCT CAGCGAGGGC ATCCTGCTCG GGCGCAATGA GCTCTACGGC
GTCGAGGAAG CATACGCGCC CGAGGGCATC ACCCTCAAGC TCGACGTGGC AAGCGCGGCC
TTCGCGCGGC TGAAGGCGCG CCGCCGCTCG ATGGCCGGAC GCACGGGCTG CGGCCTGTGC
GGCACGGAGA GCCTGGCGCA TGTCACGCGT GCGCTGCCGC CGTTGCCCGA GGGCCCGGCG
CTTTCGACCC GCGCTGTCGC GCGCGGCATG CGGGAGCTGG CATCGATGCA GGTGCTGCAG
AAGGTCACCG GCGCCGTGCA CGCGGCGGCC TGGTGCAGCG CCGAGGGCGA GGCCCTGCTG
GTGCGCGAGG ACGTCGGCCG CCACAACGCG CTCGACAAGC TCGTCGGCGC GCTCGCAAGA
AGCAGTGTGC CCGCCTCCAC CGGCTTCATC GCGGTGACCA GCCGCGCGAG TTTCGAGATG
GTGCAGAAAA CCGTCGCGGC CCGCGTGCCG CTGCTGGCCG CCGTTTCGGC CTCGACCTCG
CTGGCCACGG CCATTGCAGA GGACGCGGGC CTGACGCTGG CGGGCTTCGT GCGCGGCGAC
GACCTGGTCA TCTACACCCA CCCGTGGCGG CTCAACGGCC TGCCCGCCAA CGCCTGA
 
Protein sequence
MNLSDVPLRP GSAELLPVRG VRALQAFDNR DWVAVEVPVA LEFNGIAHAV MLATPTDLAD 
FALGFALSEG ILLGRNELYG VEEAYAPEGI TLKLDVASAA FARLKARRRS MAGRTGCGLC
GTESLAHVTR ALPPLPEGPA LSTRAVARGM RELASMQVLQ KVTGAVHAAA WCSAEGEALL
VREDVGRHNA LDKLVGALAR SSVPASTGFI AVTSRASFEM VQKTVAARVP LLAAVSASTS
LATAIAEDAG LTLAGFVRGD DLVIYTHPWR LNGLPANA