More than 300 homologs were found in PanDaTox collection
for query gene Lferr_1352 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011761  AFE_1654  formate dehydrogenase family accessory protein FdhD  100 
 
 
282 aa  579  1e-164  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1352  formate dehydrogenase family accessory protein FdhD  100 
 
 
282 aa  579  1e-164  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0690  formate dehydrogenase family accessory protein FdhD  51.82 
 
 
285 aa  266  4e-70  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0839  formate dehydrogenase family accessory protein FdhD  51.82 
 
 
285 aa  266  4e-70  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.734645  normal 
 
 
-
 
NC_008786  Veis_2382  formate dehydrogenase family accessory protein FdhD  38.62 
 
 
277 aa  164  1.0000000000000001e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3088  formate dehydrogenase accessory protein  38.33 
 
 
278 aa  153  2e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0620  formate dehydrogenase accessory protein  37.76 
 
 
288 aa  154  2e-36  Ralstonia eutropha JMP134  Bacteria  normal  0.979772  n/a   
 
 
-
 
NC_010717  PXO_00469  formate dehydrogenase accessory protein  38.1 
 
 
273 aa  150  2e-35  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0885199  n/a   
 
 
-
 
NC_007958  RPD_0622  formate dehydrogenase accessory protein  38.17 
 
 
275 aa  150  2e-35  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3020  formate dehydrogenase family accessory protein FdhD  36.33 
 
 
278 aa  150  3e-35  Variovorax paradoxus S110  Bacteria  normal  0.848082  n/a   
 
 
-
 
NC_011989  Avi_4096  formate dehydrogenase family accessory protein FdhD  36.4 
 
 
274 aa  149  4e-35  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2059  formate dehydrogenase accessory protein FdhD  38.06 
 
 
277 aa  149  5e-35  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0556  formate dehydrogenase accessory protein  37.94 
 
 
281 aa  149  7e-35  Cupriavidus metallidurans CH34  Bacteria  normal  0.152789  normal  0.415785 
 
 
-
 
NC_011662  Tmz1t_0200  formate dehydrogenase family accessory protein FdhD  37.8 
 
 
272 aa  148  8e-35  Thauera sp. MZ1T  Bacteria  normal  0.754057  n/a   
 
 
-
 
NC_011071  Smal_2149  formate dehydrogenase family accessory protein FdhD  38.52 
 
 
282 aa  147  1.0000000000000001e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4644  formate dehydrogenase accessory protein  37.34 
 
 
272 aa  146  4.0000000000000006e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3264  formate dehydrogenase family accessory protein FdhD  39.58 
 
 
291 aa  145  8.000000000000001e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.859238  normal  0.14649 
 
 
-
 
NC_011757  Mchl_3588  formate dehydrogenase family accessory protein FdhD  39.58 
 
 
291 aa  145  9e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0806  formate dehydrogenase accessory protein  36.51 
 
 
276 aa  145  1e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3819  formate dehydrogenase accessory protein  37.45 
 
 
269 aa  144  2e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.934196  n/a   
 
 
-
 
NC_007947  Mfla_0719  formate dehydrogenase family accessory protein FdhD  36.07 
 
 
278 aa  143  4e-33  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3460  formate dehydrogenase family accessory protein FdhD  38.75 
 
 
291 aa  141  9.999999999999999e-33  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0723  formate dehydrogenase accessory protein  36.07 
 
 
277 aa  141  9.999999999999999e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3478  formate dehydrogenase family accessory protein FdhD  36.59 
 
 
292 aa  141  9.999999999999999e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.739751  normal  0.474196 
 
 
-
 
NC_014151  Cfla_2115  formate dehydrogenase family accessory protein FdhD  35.6 
 
 
273 aa  141  9.999999999999999e-33  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_0082  formate dehydrogenase accessory protein  34.21 
 
 
278 aa  140  1.9999999999999998e-32  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2747  formate dehydrogenase family accessory protein FdhD  35.47 
 
 
292 aa  140  3e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0059323 
 
 
-
 
NC_003910  CPS_4025  formate dehydrogenase accessory protein FdhD  35.91 
 
 
283 aa  139  3.9999999999999997e-32  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_1320  formate dehydrogenase family accessory protein FdhD  36.25 
 
 
254 aa  139  3.9999999999999997e-32  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_008687  Pden_2855  formate dehydrogenase family accessory protein FdhD  35.42 
 
 
273 aa  139  6e-32  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0838  formate dehydrogenase family accessory protein FdhD  37.5 
 
 
275 aa  135  5e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.0377992  n/a   
 
 
-
 
NC_002977  MCA1390  formate dehydrogenase accessory protein FdhD  34.54 
 
 
306 aa  135  6.0000000000000005e-31  Methylococcus capsulatus str. Bath  Bacteria  normal  0.780868  n/a   
 
 
-
 
NC_009708  YpsIP31758_4120  formate dehydrogenase accessory protein  34.14 
 
 
274 aa  135  7.000000000000001e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3771  formate dehydrogenase accessory protein  33.73 
 
 
274 aa  135  9.999999999999999e-31  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3924  formate dehydrogenase accessory protein  35.77 
 
 
274 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.789424  normal 
 
 
-
 
NC_010465  YPK_0036  formate dehydrogenase accessory protein  33.73 
 
 
274 aa  134  1.9999999999999998e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2130  formate dehydrogenase family accessory protein FdhD  37.5 
 
 
283 aa  134  1.9999999999999998e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  0.455912  normal  0.581272 
 
 
-
 
NC_010511  M446_2355  formate dehydrogenase family accessory protein FdhD  37.5 
 
 
283 aa  133  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0108  formate dehydrogenase accessory protein  37.6 
 
 
278 aa  133  3.9999999999999996e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0737  formate dehydrogenase family accessory protein FdhD  37.55 
 
 
264 aa  132  5e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3635  formate dehydrogenase accessory protein  36.1 
 
 
274 aa  132  6e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222739 
 
 
-
 
NC_011886  Achl_3467  formate dehydrogenase family accessory protein FdhD  33.58 
 
 
294 aa  132  6e-30  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008322  Shewmr7_0103  formate dehydrogenase accessory protein  37.6 
 
 
278 aa  132  6e-30  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3012  formate dehydrogenase family accessory protein FdhD  37.92 
 
 
290 aa  132  6.999999999999999e-30  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.492307 
 
 
-
 
NC_011894  Mnod_0254  formate dehydrogenase family accessory protein FdhD  34.83 
 
 
299 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0343903  n/a   
 
 
-
 
NC_008577  Shewana3_0108  formate dehydrogenase accessory protein  37.86 
 
 
278 aa  131  2.0000000000000002e-29  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0919  formate dehydrogenase family accessory protein FdhD  35.61 
 
 
292 aa  130  3e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_004347  SO_0107  formate dehydrogenase accessory protein  35.07 
 
 
278 aa  129  4.0000000000000003e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0110  formate dehydrogenase accessory protein  37.66 
 
 
278 aa  129  5.0000000000000004e-29  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0106  formate dehydrogenase accessory protein  37.66 
 
 
278 aa  129  5.0000000000000004e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0877  formate dehydrogenase family accessory protein FdhD  37.88 
 
 
288 aa  129  5.0000000000000004e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0111  formate dehydrogenase accessory protein  37.66 
 
 
278 aa  129  5.0000000000000004e-29  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4073  formate dehydrogenase family accessory protein FdhD  37.07 
 
 
280 aa  129  5.0000000000000004e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.110434  normal  0.0860258 
 
 
-
 
NC_008048  Sala_0188  formate dehydrogenase family accessory protein FdhD  36.57 
 
 
267 aa  129  5.0000000000000004e-29  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1157  formate dehydrogenase family accessory protein FdhD  36.9 
 
 
274 aa  129  5.0000000000000004e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2557  formate dehydrogenase accessory protein  33.06 
 
 
269 aa  129  7.000000000000001e-29  Jannaschia sp. CCS1  Bacteria  normal  0.266553  normal 
 
 
-
 
NC_009636  Smed_2896  formate dehydrogenase accessory protein  36.43 
 
 
302 aa  129  7.000000000000001e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.805678  normal 
 
 
-
 
NC_010498  EcSMS35_4282  formate dehydrogenase accessory protein  32.23 
 
 
267 aa  129  7.000000000000001e-29  Escherichia coli SMS-3-5  Bacteria  normal  0.715148  normal 
 
 
-
 
CP001509  ECD_03780  formate dehydrogenase accessory protein  32.23 
 
 
277 aa  129  8.000000000000001e-29  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4089  formate dehydrogenase family accessory protein FdhD  32.23 
 
 
277 aa  129  8.000000000000001e-29  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4374  formate dehydrogenase accessory protein  32.23 
 
 
266 aa  129  8.000000000000001e-29  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4122  formate dehydrogenase accessory protein  32.23 
 
 
277 aa  129  8.000000000000001e-29  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A4123  formate dehydrogenase accessory protein  32.23 
 
 
266 aa  129  8.000000000000001e-29  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03729  hypothetical protein  32.23 
 
 
277 aa  129  8.000000000000001e-29  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4425  formate dehydrogenase accessory protein  32.23 
 
 
266 aa  129  8.000000000000001e-29  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5346  formate dehydrogenase accessory protein  32.23 
 
 
277 aa  129  8.000000000000001e-29  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4365  formate dehydrogenase accessory protein  32.17 
 
 
278 aa  128  9.000000000000001e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0444  formate dehydrogenase accessory protein  33.74 
 
 
287 aa  128  9.000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1914  formate dehydrogenase family accessory protein FdhD  37.35 
 
 
285 aa  128  1.0000000000000001e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.84446  hitchhiker  0.0000450272 
 
 
-
 
NC_013159  Svir_12240  formate dehydrogenase family accessory protein FdhD  36.4 
 
 
272 aa  128  1.0000000000000001e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_4441  formate dehydrogenase accessory protein  31.67 
 
 
277 aa  127  1.0000000000000001e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4319  formate dehydrogenase accessory protein  32.17 
 
 
278 aa  127  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.25899  normal  0.917498 
 
 
-
 
NC_012917  PC1_4159  formate dehydrogenase accessory protein  32.08 
 
 
277 aa  128  1.0000000000000001e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1443  formate dehydrogenase accessory protein FdhD  31.73 
 
 
336 aa  127  2.0000000000000002e-28  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.727621 
 
 
-
 
NC_011205  SeD_A4430  formate dehydrogenase accessory protein  32.17 
 
 
278 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.141571  normal 
 
 
-
 
NC_008010  Dgeo_2744  formate dehydrogenase family accessory protein FdhD  37.04 
 
 
251 aa  127  2.0000000000000002e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4274  formate dehydrogenase accessory protein  32.17 
 
 
278 aa  127  2.0000000000000002e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_7065  formate dehydrogenase family accessory protein FdhD  36.86 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.20274  normal  0.543352 
 
 
-
 
NC_008726  Mvan_4033  formate dehydrogenase accessory protein  31.99 
 
 
287 aa  127  2.0000000000000002e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.681532  normal  0.294632 
 
 
-
 
NC_013216  Dtox_3374  formate dehydrogenase family accessory protein FdhD  30.56 
 
 
260 aa  127  2.0000000000000002e-28  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1603  formate dehydrogenase, subunit FdhD  29.68 
 
 
337 aa  126  3e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  0.41587  normal  0.291375 
 
 
-
 
NC_011145  AnaeK_0873  formate dehydrogenase family accessory protein FdhD  37.4 
 
 
288 aa  126  3e-28  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1423  formate dehydrogenase family accessory protein FdhD  36.86 
 
 
289 aa  127  3e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_15020  formate dehydrogenase family accessory protein FdhD  36.4 
 
 
281 aa  127  3e-28  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.503102  normal 
 
 
-
 
NC_008544  Bcen2424_6406  formate dehydrogenase family accessory protein FdhD  36.86 
 
 
289 aa  127  3e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  0.678396  normal 
 
 
-
 
NC_013595  Sros_1325  formate dehydrogenase  34.62 
 
 
282 aa  126  4.0000000000000003e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.201918 
 
 
-
 
NC_011094  SeSA_A4252  formate dehydrogenase accessory protein  32.65 
 
 
278 aa  126  4.0000000000000003e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.720037 
 
 
-
 
NC_007509  Bcep18194_C6967  formate dehydrogenase, subunit FdhD  37.11 
 
 
289 aa  126  5e-28  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3157  formate dehydrogenase family accessory protein FdhD  32.62 
 
 
281 aa  126  5e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.630603  normal 
 
 
-
 
NC_010581  Bind_0994  formate dehydrogenase family accessory protein FdhD  32.92 
 
 
295 aa  125  7e-28  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.506851  normal 
 
 
-
 
NC_012880  Dd703_0073  formate dehydrogenase accessory protein  32.13 
 
 
277 aa  125  7e-28  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3534  formate dehydrogenase family accessory protein FdhD  35.94 
 
 
284 aa  125  8.000000000000001e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0057  formate dehydrogenase accessory protein  32.13 
 
 
272 aa  125  9e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0758  formate dehydrogenase family accessory protein FdhD  34.69 
 
 
299 aa  125  9e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_0748  formate dehydrogenase family accessory protein FdhD  34.2 
 
 
271 aa  125  9e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0802  formate dehydrogenase family accessory protein FdhD  34.75 
 
 
309 aa  124  1e-27  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_0639  formate dehydrogenase family accessory protein FdhD  34.07 
 
 
255 aa  124  2e-27  Sulfolobus solfataricus 98/2  Archaea  normal  0.444789  n/a   
 
 
-
 
NC_013161  Cyan8802_0784  formate dehydrogenase family accessory protein FdhD  34.69 
 
 
299 aa  124  2e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2742  formate dehydrogenase accessory protein  34.98 
 
 
271 aa  124  2e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.455642 
 
 
-
 
NC_007333  Tfu_1624  formate dehydrogenase accessory protein  36.33 
 
 
275 aa  123  4e-27  Thermobifida fusca YX  Bacteria  normal  0.199677  n/a   
 
 
-
 
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