More than 300 homologs were found in PanDaTox collection
for query gene PC1_3149 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_3149  putative two-component response-regulatory protein YehT  100 
 
 		 238 aa  487  1e-137  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_1130  putative two-component response-regulatory protein YehT  97.89 
 
 		 238 aa  451  1.0000000000000001e-126  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  77.31 
 
 		 238 aa  385  1e-106  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  77.31 
 
 		 238 aa  386  1e-106  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  77.31 
 
 		 238 aa  386  1e-106  Yersinia pestis Angola  Bacteria  normal  1  normal  0.159726 
 
 
-
 
NC_007908  Rfer_2452  putative two-component response-regulatory protein YehT  58.65 
 
 		 238 aa  298  5e-80  Rhodoferax ferrireducens T118  Bacteria  normal  0.0310324  n/a   
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  56.67 
 
 		 239 aa  295  5e-79  Enterobacter sp. 638  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_00984  putative two-component response-regulatory protein YehT  57.26 
 
 		 242 aa  290  2e-77  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_004414  response regulator of the LytR/AlgR family  56.02 
 
 		 242 aa  288  6e-77  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  55 
 
 		 239 aa  287  1e-76  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02012  hypothetical protein  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  55.42 
 
 		 239 aa  286  2e-76  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  0.148941 
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  54.58 
 
 		 239 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  54.58 
 
 		 239 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal  1 
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  54.58 
 
 		 239 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  54.58 
 
 		 239 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  55.42 
 
 		 239 aa  286  2.9999999999999996e-76  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  54.58 
 
 		 239 aa  286  2.9999999999999996e-76  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  55.83 
 
 		 241 aa  285  5e-76  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_012880  Dd703_0957  putative two-component response-regulatory protein YehT  56.07 
 
 		 241 aa  284  8e-76  Dickeya dadantii Ech703  Bacteria  normal  0.147856  n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  56.96 
 
 		 237 aa  282  3.0000000000000004e-75  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3341  putative two-component response-regulatory protein YehT  54.32 
 
 		 244 aa  278  5e-74  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.798853 
 
 
-
 
NC_007643  Rru_A0376  putative two-component response-regulatory protein YehT  60.08 
 
 		 238 aa  276  2e-73  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1658  putative two-component response-regulatory protein YehT  54.58 
 
 		 236 aa  275  3e-73  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000153786  n/a   
 
 
-
 
NC_011663  Sbal223_2685  putative two-component response-regulatory protein YehT  54.58 
 
 		 236 aa  275  3e-73  Shewanella baltica OS223  Bacteria  normal  0.0538398  hitchhiker  0.000367908 
 
 
-
 
NC_009052  Sbal_1673  putative two-component response-regulatory protein YehT  54.58 
 
 		 236 aa  275  3e-73  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000537167  n/a   
 
 
-
 
NC_009997  Sbal195_1695  putative two-component response-regulatory protein YehT  54.58 
 
 		 236 aa  275  3e-73  Shewanella baltica OS195  Bacteria  decreased coverage  0.00000884824  normal  1 
 
 
-
 
NC_007925  RPC_1083  putative two-component response-regulatory protein YehT  55.23 
 
 		 239 aa  273  2.0000000000000002e-72  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.450563  normal  1 
 
 
-
 
NC_009832  Spro_4587  putative two-component response-regulatory protein YehT  56.67 
 
 		 241 aa  271  6e-72  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_1548  putative two-component response-regulatory protein YehT  53.16 
 
 		 236 aa  268  5e-71  Shewanella putrefaciens CN-32  Bacteria  normal  0.496368  n/a   
 
 
-
 
NC_007298  Daro_2093  putative two-component response-regulatory protein YehT  54.17 
 
 		 237 aa  268  8e-71  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_2594  putative two-component response-regulatory protein YehT  52.74 
 
 		 236 aa  267  8.999999999999999e-71  Shewanella sp. ANA-3  Bacteria  normal  0.0103906  hitchhiker  0.00157605 
 
 
-
 
NC_008322  Shewmr7_2502  putative two-component response-regulatory protein YehT  52.32 
 
 		 236 aa  266  2e-70  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00178929  normal  0.0452702 
 
 
-
 
NC_008321  Shewmr4_2432  putative two-component response-regulatory protein YehT  51.9 
 
 		 236 aa  266  2.9999999999999995e-70  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000158974  hitchhiker  0.00361478 
 
 
-
 
NC_009831  Ssed_2883  putative two-component response-regulatory protein YehT  52.97 
 
 		 236 aa  264  1e-69  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000903631  unclonable  0.0000000000401288 
 
 
-
 
NC_004347  SO_2823  putative two-component response-regulatory protein YehT  51.9 
 
 		 236 aa  262  3e-69  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1765  putative two-component response-regulatory protein YehT  52.36 
 
 		 232 aa  261  8.999999999999999e-69  Shewanella woodyi ATCC 51908  Bacteria  normal  0.199181  hitchhiker  0.00544661 
 
 
-
 
NC_009092  Shew_2329  putative two-component response-regulatory protein YehT  51.9 
 
 		 236 aa  257  1e-67  Shewanella loihica PV-4  Bacteria  normal  0.0108361  normal  0.9097 
 
 
-
 
NC_009901  Spea_1479  putative two-component response-regulatory protein YehT  51.69 
 
 		 236 aa  254  9e-67  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0100477  n/a   
 
 
-
 
NC_011312  VSAL_I1318  putative two-component response-regulatory protein YehT  50.63 
 
 		 238 aa  251  8.000000000000001e-66  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_1281  putative two-component response-regulatory protein YehT  50.63 
 
 		 236 aa  249  3e-65  Shewanella amazonensis SB2B  Bacteria  normal  0.155887  normal  0.0159688 
 
 
-
 
NC_008345  Sfri_2434  putative two-component response-regulatory protein YehT  47.26 
 
 		 236 aa  246  2e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.318628  n/a   
 
 
-
 
NC_009675  Anae109_1440  putative two-component response-regulatory protein YehT  47.68 
 
 		 236 aa  224  1e-57  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_3416  putative two-component response-regulatory protein YehT  43.04 
 
 		 237 aa  218  5e-56  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0577965 
 
 
-
 
NC_011145  AnaeK_3062  putative two-component response-regulatory protein YehT  45.42 
 
 		 239 aa  195  5.000000000000001e-49  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_3170  putative two-component response-regulatory protein YehT  45.42 
 
 		 239 aa  193  2e-48  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  34.94 
 
 		 252 aa  150  1e-35  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  38.19 
 
 		 253 aa  149  5e-35  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  34.98 
 
 		 317 aa  148  9e-35  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  34.78 
 
 		 246 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal  1 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  36.21 
 
 		 255 aa  143  2e-33  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  34.41 
 
 		 245 aa  142  4e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.300206 
 
 
-
 
NC_011830  Dhaf_4408  two component transcriptional regulator, LytTR family  33.46 
 
 		 268 aa  141  8e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  33.86 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_005945  BAS5295  response regulator LytR  33.86 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  33.86 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  34.68 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  33.86 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B5384  response regulator LytR  33.46 
 
 		 246 aa  140  1.9999999999999998e-32  Bacillus cereus G9842  Bacteria  normal  0.662493  normal  0.485514 
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  35.66 
 
 		 260 aa  140  1.9999999999999998e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal  1 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  35.95 
 
 		 238 aa  139  3e-32  Cryptobacterium curtum DSM 15641  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011725  BCB4264_A5565  response regulator LytR  33.86 
 
 		 246 aa  139  3e-32  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  32.44 
 
 		 262 aa  140  3e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0103069 
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  33.46 
 
 		 246 aa  139  4.999999999999999e-32  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5137  response regulator  34.27 
 
 		 246 aa  138  6e-32  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  33.2 
 
 		 266 aa  138  7.999999999999999e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_3291  LytR/AlgR family transcriptional regulator  30.89 
 
 		 258 aa  138  7.999999999999999e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.393667  normal  1 
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  33.46 
 
 		 246 aa  138  8.999999999999999e-32  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  34.96 
 
 		 242 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  34.27 
 
 		 257 aa  137  2e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  34.71 
 
 		 237 aa  137  2e-31  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  35.34 
 
 		 251 aa  136  4e-31  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3733  response regulator receiver domain-containing protein  33.2 
 
 		 249 aa  134  9e-31  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  0.766169 
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  32.11 
 
 		 246 aa  134  9.999999999999999e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  35.6 
 
 		 240 aa  132  5e-30  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010424  Daud_0469  response regulator receiver protein  34.52 
 
 		 254 aa  132  5e-30  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  33.06 
 
 		 253 aa  131  6.999999999999999e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal  1 
 
 
-
 
NC_003910  CPS_1819  LytTr DNA-binding response regulator  32.37 
 
 		 260 aa  131  1.0000000000000001e-29  Colwellia psychrerythraea 34H  Bacteria  normal  0.148301  n/a   
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  34.57 
 
 		 249 aa  131  1.0000000000000001e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_2957  response regulator receiver protein  33.2 
 
 		 236 aa  131  1.0000000000000001e-29  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00954821  n/a   
 
 
-
 
NC_011663  Sbal223_0059  two component transcriptional regulator, LytTR family  34.73 
 
 		 243 aa  130  2.0000000000000002e-29  Shewanella baltica OS223  Bacteria  normal  0.182784  normal  1 
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  34.52 
 
 		 265 aa  130  2.0000000000000002e-29  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  32.22 
 
 		 275 aa  130  2.0000000000000002e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  32.92 
 
 		 237 aa  130  2.0000000000000002e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal  1 
 
 
-
 
NC_009665  Shew185_0055  LytTR family two component transcriptional regulator  34.31 
 
 		 243 aa  129  3e-29  Shewanella baltica OS185  Bacteria  normal  0.868518  n/a   
 
 
-
 
NC_009997  Sbal195_0060  LytTR family two component transcriptional regulator  34.73 
 
 		 243 aa  129  3e-29  Shewanella baltica OS195  Bacteria  normal  0.0478076  hitchhiker  0.000497336 
 
 
-
 
NC_009052  Sbal_4299  LytTR family two component transcriptional regulator  34.73 
 
 		 243 aa  129  3e-29  Shewanella baltica OS155  Bacteria  decreased coverage  0.000001386  n/a   
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  32.78 
 
 		 244 aa  129  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal  1 
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  29.55 
 
 		 276 aa  129  5.0000000000000004e-29  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.674394 
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  39.04 
 
 		 260 aa  128  8.000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_0057  response regulator receiver protein  34.31 
 
 		 243 aa  128  8.000000000000001e-29  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000048418  decreased coverage  0.0000000648872 
 
 
-
 
NC_008322  Shewmr7_0055  response regulator receiver protein  34.31 
 
 		 243 aa  128  8.000000000000001e-29  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000989316  hitchhiker  0.000468323 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  37.28 
 
 		 260 aa  128  9.000000000000001e-29  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_007969  Pcryo_0765  LytR/AlgR family transcriptional regulator  32.8 
 
 		 247 aa  128  9.000000000000001e-29  Psychrobacter cryohalolentis K5  Bacteria  normal  0.584976  normal  0.255142 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  30.99 
 
 		 257 aa  126  2.0000000000000002e-28  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
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