More than 300 homologs were found in PanDaTox collection
for query gene Namu_2928 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  100 
 
 
243 aa  486  1e-136  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  71.36 
 
 
215 aa  303  1.0000000000000001e-81  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  68.16 
 
 
223 aa  303  2.0000000000000002e-81  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  74.18 
 
 
225 aa  302  3.0000000000000004e-81  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  66.67 
 
 
215 aa  285  4e-76  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  67.92 
 
 
212 aa  281  8.000000000000001e-75  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  68.33 
 
 
221 aa  280  2e-74  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  65.42 
 
 
214 aa  280  2e-74  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  64.32 
 
 
214 aa  270  1e-71  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  61.23 
 
 
226 aa  270  2e-71  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  62.15 
 
 
220 aa  269  4e-71  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  64.79 
 
 
213 aa  268  5.9999999999999995e-71  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  63.72 
 
 
215 aa  265  4e-70  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  61.86 
 
 
215 aa  263  2e-69  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  63.21 
 
 
220 aa  261  4.999999999999999e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  60.83 
 
 
226 aa  254  1.0000000000000001e-66  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  60.38 
 
 
214 aa  241  6e-63  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  59.62 
 
 
213 aa  241  6e-63  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  58.96 
 
 
218 aa  241  9e-63  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  57.14 
 
 
217 aa  235  6e-61  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  56.28 
 
 
215 aa  234  1.0000000000000001e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  53.77 
 
 
218 aa  234  1.0000000000000001e-60  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  56.28 
 
 
221 aa  230  1e-59  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  59.43 
 
 
209 aa  227  1e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  54.21 
 
 
213 aa  224  1e-57  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  55.14 
 
 
214 aa  223  2e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  57.48 
 
 
213 aa  222  4e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  54.25 
 
 
215 aa  220  9.999999999999999e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  56.87 
 
 
242 aa  221  9.999999999999999e-57  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  54.46 
 
 
217 aa  219  3e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  58.41 
 
 
214 aa  219  3.9999999999999997e-56  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  53.74 
 
 
213 aa  217  1e-55  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  53.74 
 
 
214 aa  216  2e-55  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  53.74 
 
 
214 aa  216  2e-55  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  54.72 
 
 
213 aa  217  2e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  53.3 
 
 
213 aa  216  2.9999999999999998e-55  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  55.9 
 
 
228 aa  214  9.999999999999999e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  51.87 
 
 
214 aa  212  2.9999999999999995e-54  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  53.08 
 
 
211 aa  209  2e-53  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  56.54 
 
 
214 aa  209  3e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  52.34 
 
 
214 aa  209  4e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  51.17 
 
 
210 aa  208  6e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.23 
 
 
217 aa  208  6e-53  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  52.61 
 
 
209 aa  207  9e-53  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  51.85 
 
 
218 aa  207  9e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  54.17 
 
 
214 aa  206  4e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  56.6 
 
 
216 aa  205  6e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  50.94 
 
 
214 aa  204  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  55.05 
 
 
220 aa  203  2e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  50.93 
 
 
218 aa  203  2e-51  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  52.56 
 
 
215 aa  202  3e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  55.14 
 
 
218 aa  202  4e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  47.64 
 
 
214 aa  200  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  53.7 
 
 
220 aa  200  1.9999999999999998e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  52.97 
 
 
219 aa  198  5e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  47.91 
 
 
218 aa  199  5e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  53.77 
 
 
222 aa  198  5e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  50.23 
 
 
214 aa  197  1.0000000000000001e-49  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  47.69 
 
 
216 aa  196  3e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  47.91 
 
 
215 aa  194  7e-49  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  59.65 
 
 
214 aa  193  2e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  49.77 
 
 
215 aa  192  4e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  54.21 
 
 
218 aa  191  1e-47  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  50.93 
 
 
233 aa  191  1e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.62 
 
 
218 aa  187  9e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  50 
 
 
219 aa  187  1e-46  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  54.09 
 
 
228 aa  185  4e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  48.17 
 
 
219 aa  183  2.0000000000000003e-45  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  52.23 
 
 
223 aa  183  2.0000000000000003e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  49.3 
 
 
218 aa  183  2.0000000000000003e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  46.36 
 
 
235 aa  182  3e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  48.18 
 
 
228 aa  182  5.0000000000000004e-45  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.17 
 
 
211 aa  182  5.0000000000000004e-45  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  52.13 
 
 
212 aa  181  9.000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.62 
 
 
239 aa  180  1e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  46.01 
 
 
221 aa  179  2.9999999999999997e-44  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  47.47 
 
 
220 aa  179  4e-44  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.81 
 
 
213 aa  179  4e-44  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  45.58 
 
 
216 aa  179  4.999999999999999e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  52.34 
 
 
216 aa  178  8e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  44.19 
 
 
229 aa  178  8e-44  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  44.8 
 
 
228 aa  177  1e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  47.06 
 
 
257 aa  176  3e-43  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  44.25 
 
 
224 aa  175  6e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  45.25 
 
 
221 aa  171  6.999999999999999e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  51.3 
 
 
215 aa  169  3e-41  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  41.59 
 
 
217 aa  167  1e-40  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  45.66 
 
 
222 aa  162  3e-39  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  47.17 
 
 
208 aa  160  2e-38  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  45.79 
 
 
239 aa  159  4e-38  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  45 
 
 
226 aa  158  9e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  40 
 
 
218 aa  153  2e-36  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.86 
 
 
226 aa  150  1e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  39.44 
 
 
815 aa  148  6e-35  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  36.98 
 
 
463 aa  112  7.000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_009921  Franean1_5808  two component LuxR family transcriptional regulator  48.67 
 
 
146 aa  106  3e-22  Frankia sp. EAN1pec  Bacteria  normal  0.812897  normal 
 
 
-
 
NC_007005  Psyr_1940  LuxR response regulator receiver  37.5 
 
 
222 aa  100  1e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.95717  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  31.88 
 
 
218 aa  100  2e-20  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  36.82 
 
 
214 aa  100  3e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  33.48 
 
 
225 aa  99  6e-20  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.665179 
 
 
-
 
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