More than 300 homologs were found in PanDaTox collection
for query gene Franean1_2299 on replicon NC_009921
Organism: Frankia sp. EAN1pec



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  100 
 
 
242 aa  468  1.0000000000000001e-131  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  64.79 
 
 
226 aa  261  6e-69  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  65.07 
 
 
217 aa  259  3e-68  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  65.55 
 
 
213 aa  258  6e-68  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  60 
 
 
218 aa  256  2e-67  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  62.2 
 
 
220 aa  254  6e-67  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  62.68 
 
 
215 aa  254  1.0000000000000001e-66  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  61.14 
 
 
217 aa  249  4e-65  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  63.64 
 
 
214 aa  248  7e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  61.72 
 
 
218 aa  247  2e-64  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  60.66 
 
 
209 aa  246  2e-64  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  60.19 
 
 
213 aa  243  9.999999999999999e-64  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  60.19 
 
 
214 aa  241  7e-63  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  58.77 
 
 
214 aa  241  7.999999999999999e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  57.82 
 
 
211 aa  241  1e-62  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  59.81 
 
 
215 aa  240  2e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  62.5 
 
 
219 aa  239  4e-62  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  59.81 
 
 
218 aa  239  4e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  57.35 
 
 
214 aa  238  5.999999999999999e-62  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  57.35 
 
 
214 aa  238  5.999999999999999e-62  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  58.49 
 
 
215 aa  236  2e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  59.91 
 
 
215 aa  235  4e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  61.24 
 
 
213 aa  233  2.0000000000000002e-60  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  59.72 
 
 
214 aa  233  2.0000000000000002e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  58.37 
 
 
214 aa  232  3e-60  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  57.08 
 
 
243 aa  231  8.000000000000001e-60  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  56.4 
 
 
214 aa  230  1e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  57.14 
 
 
215 aa  231  1e-59  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  60.77 
 
 
213 aa  229  2e-59  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  59.05 
 
 
210 aa  229  3e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  57.08 
 
 
216 aa  228  7e-59  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  60.77 
 
 
213 aa  228  9e-59  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  55.92 
 
 
223 aa  227  1e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  60.29 
 
 
209 aa  226  2e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  57.35 
 
 
214 aa  226  3e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  57.14 
 
 
212 aa  223  2e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  58.6 
 
 
218 aa  223  2e-57  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  56.67 
 
 
215 aa  222  4e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  59.24 
 
 
212 aa  221  6e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  60.77 
 
 
222 aa  220  9.999999999999999e-57  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  55.5 
 
 
218 aa  220  1.9999999999999999e-56  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  54.5 
 
 
220 aa  219  3e-56  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  53.67 
 
 
226 aa  219  3e-56  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  56.67 
 
 
213 aa  218  7.999999999999999e-56  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  58.96 
 
 
220 aa  217  1e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  63.03 
 
 
214 aa  217  1e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  55.24 
 
 
217 aa  216  2e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  59.05 
 
 
225 aa  214  8e-55  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  55.98 
 
 
218 aa  213  1.9999999999999998e-54  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  52.97 
 
 
228 aa  213  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  50.94 
 
 
215 aa  213  2.9999999999999995e-54  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  52.15 
 
 
214 aa  211  7e-54  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  55.66 
 
 
221 aa  210  1e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  55.05 
 
 
221 aa  210  2e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  60.66 
 
 
218 aa  209  3e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  59.33 
 
 
216 aa  209  3e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  56.67 
 
 
233 aa  207  1e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  52.36 
 
 
215 aa  207  1e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  55.81 
 
 
219 aa  207  2e-52  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  51.2 
 
 
221 aa  206  3e-52  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  59.24 
 
 
214 aa  205  4e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  58.41 
 
 
223 aa  203  2e-51  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  58.72 
 
 
239 aa  202  3e-51  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  53.3 
 
 
216 aa  202  3e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  56.4 
 
 
213 aa  201  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  52.86 
 
 
215 aa  199  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  49.76 
 
 
217 aa  198  7e-50  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  60 
 
 
228 aa  196  2.0000000000000003e-49  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  52.83 
 
 
218 aa  196  2.0000000000000003e-49  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  49.28 
 
 
214 aa  196  3e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  53.81 
 
 
214 aa  193  2e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  61.63 
 
 
214 aa  192  4e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  54.4 
 
 
218 aa  191  7e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  49.3 
 
 
219 aa  191  1e-47  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  48.61 
 
 
224 aa  190  2e-47  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  57.94 
 
 
215 aa  188  5.999999999999999e-47  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  51.16 
 
 
221 aa  187  1e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  50 
 
 
257 aa  187  1e-46  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.93 
 
 
213 aa  182  3e-45  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  50.46 
 
 
228 aa  177  2e-43  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.67 
 
 
211 aa  176  2e-43  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  49.77 
 
 
220 aa  173  1.9999999999999998e-42  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  43.81 
 
 
815 aa  171  1e-41  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  46.88 
 
 
235 aa  171  1e-41  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  46.76 
 
 
229 aa  169  3e-41  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  49.3 
 
 
220 aa  169  4e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  44.95 
 
 
228 aa  164  1.0000000000000001e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  49.76 
 
 
208 aa  163  2.0000000000000002e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  42.52 
 
 
218 aa  163  2.0000000000000002e-39  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  53.08 
 
 
216 aa  162  4.0000000000000004e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  45.05 
 
 
239 aa  160  2e-38  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  44.81 
 
 
222 aa  154  1e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  44.7 
 
 
226 aa  150  1e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.05 
 
 
226 aa  150  2e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  36.87 
 
 
224 aa  121  9e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  37.17 
 
 
463 aa  119  3.9999999999999996e-26  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.33 
 
 
217 aa  111  8.000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  34.69 
 
 
213 aa  110  2.0000000000000002e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  35.29 
 
 
223 aa  109  3e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  32.34 
 
 
222 aa  108  8.000000000000001e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>