More than 300 homologs were found in PanDaTox collection
for query gene Franean1_6700 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  100 
 
 
257 aa  498  1e-140  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  59.81 
 
 
221 aa  223  2e-57  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  53.24 
 
 
214 aa  202  5e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  53.7 
 
 
215 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  54.93 
 
 
217 aa  198  6e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  53 
 
 
226 aa  196  3e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  53.3 
 
 
212 aa  193  3e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  50.94 
 
 
215 aa  191  7e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  50.47 
 
 
214 aa  189  2.9999999999999997e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  50 
 
 
214 aa  189  4e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  50.93 
 
 
218 aa  189  4e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  50.7 
 
 
223 aa  188  5.999999999999999e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  51.87 
 
 
215 aa  188  9e-47  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  51.36 
 
 
219 aa  187  2e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.31 
 
 
217 aa  187  2e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  48.58 
 
 
218 aa  185  6e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  52.58 
 
 
213 aa  185  7e-46  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  49.77 
 
 
214 aa  184  1.0000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  50 
 
 
226 aa  184  1.0000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  50.93 
 
 
219 aa  183  2.0000000000000003e-45  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  49.53 
 
 
218 aa  183  2.0000000000000003e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  51.39 
 
 
218 aa  183  2.0000000000000003e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  51.17 
 
 
218 aa  182  3e-45  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  48.58 
 
 
215 aa  183  3e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  51.4 
 
 
213 aa  182  5.0000000000000004e-45  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  50.23 
 
 
215 aa  182  6e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  48.37 
 
 
214 aa  182  7e-45  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  50 
 
 
242 aa  181  7e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  50.94 
 
 
220 aa  181  8.000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  48.13 
 
 
215 aa  181  1e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  49.07 
 
 
220 aa  181  1e-44  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  53.05 
 
 
209 aa  181  2e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  49.07 
 
 
214 aa  179  2.9999999999999997e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  50.47 
 
 
213 aa  178  5.999999999999999e-44  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  50 
 
 
216 aa  178  8e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  51.36 
 
 
220 aa  177  1e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  50.23 
 
 
213 aa  176  3e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  47.06 
 
 
243 aa  176  3e-43  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  53.52 
 
 
212 aa  176  4e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  51.4 
 
 
214 aa  175  5e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  45.79 
 
 
215 aa  175  6e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  50.93 
 
 
228 aa  175  7e-43  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  52.04 
 
 
219 aa  174  9.999999999999999e-43  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  46.98 
 
 
214 aa  174  9.999999999999999e-43  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  46.98 
 
 
214 aa  174  9.999999999999999e-43  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  49.32 
 
 
222 aa  174  1.9999999999999998e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  47.17 
 
 
210 aa  173  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  49.77 
 
 
216 aa  174  1.9999999999999998e-42  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  49.3 
 
 
215 aa  173  2.9999999999999996e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  47.89 
 
 
213 aa  172  5e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  47.66 
 
 
221 aa  172  5.999999999999999e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  47.42 
 
 
209 aa  172  5.999999999999999e-42  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  46.76 
 
 
217 aa  170  2e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  46.48 
 
 
211 aa  170  2e-41  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  50.23 
 
 
214 aa  170  2e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  51.82 
 
 
221 aa  169  3e-41  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  49.31 
 
 
221 aa  169  4e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  47.93 
 
 
220 aa  169  5e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  49.07 
 
 
220 aa  169  5e-41  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  52.58 
 
 
216 aa  168  8e-41  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  49.3 
 
 
218 aa  167  1e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  46.54 
 
 
217 aa  166  2e-40  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  51.89 
 
 
225 aa  167  2e-40  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  47.89 
 
 
224 aa  167  2e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  48.71 
 
 
233 aa  166  2.9999999999999998e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  48.64 
 
 
235 aa  165  5.9999999999999996e-40  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  49.3 
 
 
215 aa  165  6.9999999999999995e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  51.4 
 
 
214 aa  165  6.9999999999999995e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  46.01 
 
 
213 aa  165  8e-40  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  46.26 
 
 
229 aa  164  9e-40  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.87 
 
 
218 aa  164  1.0000000000000001e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  49.53 
 
 
239 aa  162  6e-39  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  46.12 
 
 
228 aa  162  7e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  50.7 
 
 
214 aa  160  1e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  45.66 
 
 
218 aa  160  2e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  46.73 
 
 
213 aa  159  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  48.26 
 
 
228 aa  151  8e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.92 
 
 
213 aa  151  1e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  46.23 
 
 
214 aa  150  2e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  48.6 
 
 
218 aa  150  2e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  43.87 
 
 
214 aa  149  5e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  41.01 
 
 
218 aa  145  9e-34  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  51.3 
 
 
215 aa  143  3e-33  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.73 
 
 
239 aa  141  9.999999999999999e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  43.58 
 
 
228 aa  140  1.9999999999999998e-32  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  49.13 
 
 
214 aa  139  3.9999999999999997e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  48.94 
 
 
223 aa  139  3.9999999999999997e-32  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.79 
 
 
211 aa  138  8.999999999999999e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  47.93 
 
 
216 aa  137  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  42.79 
 
 
815 aa  137  2e-31  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  45.21 
 
 
226 aa  137  2e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  41.1 
 
 
222 aa  132  5e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.01 
 
 
226 aa  132  6e-30  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  43.4 
 
 
208 aa  126  4.0000000000000003e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  35.86 
 
 
218 aa  112  6e-24  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  39.37 
 
 
218 aa  110  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  32.14 
 
 
228 aa  110  3e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  39.09 
 
 
226 aa  108  8.000000000000001e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  41.28 
 
 
230 aa  108  1e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  37.84 
 
 
215 aa  107  2e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
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