More than 300 homologs were found in PanDaTox collection
for query gene Franean1_7246 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  100 
 
 
215 aa  419  1e-116  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  72.17 
 
 
220 aa  310  1e-83  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  71.03 
 
 
215 aa  297  8e-80  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  70.42 
 
 
214 aa  292  2e-78  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  70.28 
 
 
214 aa  285  4e-76  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  69.01 
 
 
213 aa  282  2.0000000000000002e-75  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  67.92 
 
 
218 aa  282  3.0000000000000004e-75  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  67.61 
 
 
214 aa  281  4.0000000000000003e-75  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  68.08 
 
 
213 aa  280  9e-75  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  65.57 
 
 
217 aa  271  4.0000000000000004e-72  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  62.91 
 
 
215 aa  266  2e-70  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  64.15 
 
 
212 aa  266  2e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  63.68 
 
 
218 aa  266  2e-70  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  64.79 
 
 
213 aa  265  5e-70  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  61.86 
 
 
243 aa  263  1e-69  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  63.21 
 
 
226 aa  258  4e-68  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  61.32 
 
 
223 aa  258  5.0000000000000005e-68  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  63.68 
 
 
213 aa  258  6e-68  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  62.26 
 
 
215 aa  257  8e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  60.93 
 
 
226 aa  255  3e-67  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  60.65 
 
 
220 aa  254  7e-67  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  62.26 
 
 
213 aa  251  7e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  63.68 
 
 
221 aa  249  2e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  64.15 
 
 
213 aa  248  6e-65  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  62.44 
 
 
209 aa  247  7e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  64.15 
 
 
225 aa  247  1e-64  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  60.75 
 
 
213 aa  246  2e-64  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  61.79 
 
 
228 aa  246  2e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  60.85 
 
 
217 aa  246  2e-64  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  62.68 
 
 
242 aa  244  6.999999999999999e-64  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  60.65 
 
 
221 aa  243  9.999999999999999e-64  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  58.96 
 
 
215 aa  243  9.999999999999999e-64  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  58.49 
 
 
214 aa  242  1.9999999999999999e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  59.43 
 
 
214 aa  243  1.9999999999999999e-63  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  56.13 
 
 
215 aa  241  6e-63  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  58.96 
 
 
217 aa  241  7e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  58.02 
 
 
214 aa  241  7.999999999999999e-63  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  58.02 
 
 
214 aa  241  7.999999999999999e-63  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  58.14 
 
 
218 aa  238  4e-62  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  58.69 
 
 
214 aa  235  3e-61  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  57.42 
 
 
211 aa  234  8e-61  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  59.15 
 
 
218 aa  234  9e-61  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  58.37 
 
 
209 aa  234  1.0000000000000001e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  64.32 
 
 
214 aa  232  3e-60  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  58.02 
 
 
210 aa  229  2e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  57.08 
 
 
218 aa  228  5e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  63.13 
 
 
218 aa  228  6e-59  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  57.73 
 
 
219 aa  227  8e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  57.48 
 
 
215 aa  226  1e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  57.75 
 
 
216 aa  226  1e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  61.32 
 
 
214 aa  224  6e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  54.72 
 
 
214 aa  223  2e-57  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.56 
 
 
218 aa  222  4e-57  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  61.5 
 
 
216 aa  221  6e-57  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  59.91 
 
 
222 aa  221  7e-57  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  59.72 
 
 
233 aa  221  9e-57  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  56.87 
 
 
214 aa  220  9.999999999999999e-57  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  61.93 
 
 
228 aa  219  1.9999999999999999e-56  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.77 
 
 
213 aa  218  5e-56  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  55.35 
 
 
224 aa  218  6e-56  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  57.75 
 
 
220 aa  217  1e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  58.02 
 
 
218 aa  217  1e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  56.94 
 
 
214 aa  216  2.9999999999999998e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  56.94 
 
 
219 aa  215  4e-55  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  52.11 
 
 
215 aa  215  4e-55  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  60.38 
 
 
214 aa  215  4e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.14 
 
 
211 aa  214  7e-55  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  60.95 
 
 
212 aa  213  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  54.46 
 
 
215 aa  211  7.999999999999999e-54  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  60.37 
 
 
223 aa  210  1e-53  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  52.83 
 
 
221 aa  210  1e-53  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  55.56 
 
 
220 aa  209  2e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  52.36 
 
 
214 aa  209  3e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  53.95 
 
 
219 aa  209  4e-53  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  50.7 
 
 
216 aa  207  8e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  55.56 
 
 
221 aa  206  3e-52  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  53.21 
 
 
220 aa  206  3e-52  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  53.88 
 
 
228 aa  204  7e-52  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  57.99 
 
 
239 aa  204  9e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  51.83 
 
 
218 aa  198  5e-50  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  57.55 
 
 
216 aa  193  2e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  48.11 
 
 
217 aa  192  3e-48  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  56.77 
 
 
215 aa  190  1e-47  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  54.21 
 
 
208 aa  190  1e-47  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  49.3 
 
 
229 aa  189  2.9999999999999997e-47  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  51.87 
 
 
257 aa  188  5.999999999999999e-47  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  50.93 
 
 
222 aa  184  1.0000000000000001e-45  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  50.23 
 
 
235 aa  182  5.0000000000000004e-45  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  50.7 
 
 
239 aa  174  9.999999999999999e-43  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  48.64 
 
 
226 aa  166  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  43.46 
 
 
815 aa  165  5e-40  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  44.19 
 
 
228 aa  162  3e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.66 
 
 
226 aa  159  3e-38  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  41.23 
 
 
218 aa  158  5e-38  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  42.51 
 
 
218 aa  130  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  40.37 
 
 
224 aa  124  1e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  41.09 
 
 
213 aa  121  6e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  40.1 
 
 
463 aa  119  1.9999999999999998e-26  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  38.24 
 
 
226 aa  118  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  37.2 
 
 
215 aa  117  9.999999999999999e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
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