More than 300 homologs were found in PanDaTox collection
for query gene Sked_35890 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
239 aa  465  9.999999999999999e-131  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  78.18 
 
 
223 aa  303  2.0000000000000002e-81  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  75.93 
 
 
218 aa  291  8e-78  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  64.06 
 
 
219 aa  257  1e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  57.53 
 
 
218 aa  233  1.0000000000000001e-60  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  58.99 
 
 
218 aa  230  1e-59  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  60.19 
 
 
220 aa  231  1e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  60.83 
 
 
217 aa  226  3e-58  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  61.29 
 
 
228 aa  223  2e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  57.87 
 
 
213 aa  222  3e-57  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  56.68 
 
 
214 aa  221  9.999999999999999e-57  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  56.68 
 
 
214 aa  221  9.999999999999999e-57  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  57.6 
 
 
214 aa  221  9.999999999999999e-57  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  56.94 
 
 
218 aa  220  1.9999999999999999e-56  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  56.88 
 
 
215 aa  219  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  58.53 
 
 
213 aa  219  3e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  56.02 
 
 
218 aa  219  3e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  57.99 
 
 
215 aa  219  3e-56  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  56.28 
 
 
213 aa  218  7e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  58.9 
 
 
226 aa  218  7e-56  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  60.93 
 
 
209 aa  218  7.999999999999999e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  56.54 
 
 
211 aa  216  2e-55  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  57.41 
 
 
214 aa  217  2e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  58.14 
 
 
213 aa  214  8e-55  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  58.6 
 
 
213 aa  214  8e-55  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  57.01 
 
 
209 aa  214  9.999999999999999e-55  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  59.35 
 
 
242 aa  213  2.9999999999999995e-54  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  55.09 
 
 
215 aa  212  3.9999999999999995e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  58.53 
 
 
214 aa  211  7e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  54.21 
 
 
214 aa  211  7e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.84 
 
 
217 aa  209  2e-53  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  55.3 
 
 
214 aa  209  3e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  55.09 
 
 
215 aa  208  5e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  56.07 
 
 
214 aa  208  5e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  56.02 
 
 
215 aa  207  1e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  57.6 
 
 
218 aa  206  3e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  54.17 
 
 
217 aa  204  1e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  54.63 
 
 
214 aa  203  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  56.74 
 
 
214 aa  201  9.999999999999999e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  55.25 
 
 
223 aa  200  1.9999999999999998e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  53.67 
 
 
220 aa  199  1.9999999999999998e-50  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  53 
 
 
212 aa  199  3e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  56.22 
 
 
215 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  60.19 
 
 
214 aa  197  1.0000000000000001e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  56.36 
 
 
221 aa  196  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  52.29 
 
 
216 aa  196  4.0000000000000005e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  50.44 
 
 
243 aa  195  5.000000000000001e-49  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  49.55 
 
 
219 aa  195  6e-49  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  53.24 
 
 
213 aa  195  7e-49  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  50.69 
 
 
215 aa  194  1e-48  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  54.88 
 
 
216 aa  194  1e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  55.5 
 
 
233 aa  193  2e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  51.57 
 
 
215 aa  192  4e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  54.17 
 
 
210 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  55.2 
 
 
220 aa  191  7e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  56.22 
 
 
225 aa  191  7e-48  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  57.21 
 
 
222 aa  191  9e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  50 
 
 
226 aa  189  2.9999999999999997e-47  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  60.51 
 
 
215 aa  189  4e-47  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  50.23 
 
 
214 aa  187  9e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  49.54 
 
 
215 aa  187  1e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  50.23 
 
 
221 aa  185  4e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  48.87 
 
 
219 aa  185  4e-46  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  47.68 
 
 
228 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  52.29 
 
 
216 aa  184  1.0000000000000001e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  55.87 
 
 
212 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  53.67 
 
 
220 aa  183  2.0000000000000003e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  53.24 
 
 
213 aa  181  7e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.93 
 
 
213 aa  181  8.000000000000001e-45  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  48.85 
 
 
218 aa  181  9.000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  50.47 
 
 
221 aa  179  4e-44  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  48.86 
 
 
218 aa  179  4.999999999999999e-44  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  51.63 
 
 
218 aa  177  9e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  50 
 
 
214 aa  177  1e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  49.08 
 
 
229 aa  177  2e-43  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  51.4 
 
 
208 aa  176  3e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  53.24 
 
 
214 aa  176  3e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  52 
 
 
220 aa  176  4e-43  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  50.23 
 
 
224 aa  174  9.999999999999999e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  57.49 
 
 
214 aa  174  9.999999999999999e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  51.79 
 
 
228 aa  174  1.9999999999999998e-42  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  54.38 
 
 
216 aa  174  1.9999999999999998e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  48.61 
 
 
217 aa  169  3e-41  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.62 
 
 
211 aa  167  1e-40  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  48.39 
 
 
222 aa  167  2e-40  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  45 
 
 
239 aa  158  6e-38  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  45.89 
 
 
235 aa  158  9e-38  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47 
 
 
226 aa  154  2e-36  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  44.34 
 
 
815 aa  152  5.9999999999999996e-36  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  47.3 
 
 
221 aa  150  2e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  44.26 
 
 
257 aa  147  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  41.55 
 
 
218 aa  145  7.0000000000000006e-34  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  44.25 
 
 
226 aa  137  2e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  38.64 
 
 
228 aa  133  1.9999999999999998e-30  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  37.44 
 
 
463 aa  103  3e-21  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_009921  Franean1_5808  two component LuxR family transcriptional regulator  53.15 
 
 
146 aa  96.7  3e-19  Frankia sp. EAN1pec  Bacteria  normal  0.812897  normal 
 
 
-
 
NC_008577  Shewana3_1152  two component LuxR family transcriptional regulator  32.58 
 
 
225 aa  92.4  5e-18  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1222  two component LuxR family transcriptional regulator  32.88 
 
 
225 aa  92.4  6e-18  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  33.82 
 
 
224 aa  90.1  2e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1151  two component LuxR family transcriptional regulator  32.58 
 
 
225 aa  89  6e-17  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
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