More than 300 homologs were found in PanDaTox collection
for query gene Franean1_2504 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  100 
 
 
218 aa  434  1e-121  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  50.71 
 
 
229 aa  202  4e-51  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  46.95 
 
 
213 aa  182  3e-45  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  48.34 
 
 
239 aa  182  4.0000000000000006e-45  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  45.33 
 
 
214 aa  180  2e-44  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  48.37 
 
 
221 aa  177  8e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  45.5 
 
 
226 aa  175  5e-43  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  48.11 
 
 
218 aa  174  7e-43  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  44.39 
 
 
214 aa  174  9.999999999999999e-43  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  44.39 
 
 
214 aa  174  9.999999999999999e-43  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  45.54 
 
 
210 aa  173  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  43.72 
 
 
215 aa  171  1e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  44.08 
 
 
220 aa  170  1e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  41.23 
 
 
218 aa  169  3e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  43.06 
 
 
217 aa  169  3e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  43.26 
 
 
215 aa  169  3e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  44.29 
 
 
211 aa  169  4e-41  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  45 
 
 
224 aa  169  4e-41  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  44.6 
 
 
214 aa  168  7e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  42.25 
 
 
214 aa  167  8e-41  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  42.13 
 
 
220 aa  167  8e-41  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  44.29 
 
 
209 aa  166  2.9999999999999998e-40  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  43.6 
 
 
216 aa  166  2.9999999999999998e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  41.59 
 
 
214 aa  165  4e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  44.86 
 
 
214 aa  166  4e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.13 
 
 
218 aa  164  9e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  43.87 
 
 
212 aa  164  1.0000000000000001e-39  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  42.52 
 
 
218 aa  162  5.0000000000000005e-39  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  43.13 
 
 
218 aa  162  5.0000000000000005e-39  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  42.58 
 
 
218 aa  161  7e-39  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  42.58 
 
 
226 aa  161  8.000000000000001e-39  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  40.65 
 
 
223 aa  161  9e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  41.23 
 
 
215 aa  158  5e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  41.67 
 
 
217 aa  158  5e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  42.18 
 
 
215 aa  158  6e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  40.95 
 
 
221 aa  157  1e-37  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  42.38 
 
 
242 aa  157  1e-37  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  40.28 
 
 
218 aa  156  2e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  43.58 
 
 
219 aa  156  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  42.18 
 
 
214 aa  155  5.0000000000000005e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  40.76 
 
 
217 aa  154  7e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  45.02 
 
 
214 aa  154  9e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  40 
 
 
243 aa  153  2e-36  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  44.55 
 
 
214 aa  151  5.9999999999999996e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  41.23 
 
 
213 aa  151  5.9999999999999996e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  40.47 
 
 
221 aa  150  1e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  39.81 
 
 
214 aa  150  1e-35  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  42.18 
 
 
213 aa  149  3e-35  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  37.91 
 
 
215 aa  149  3e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.32 
 
 
217 aa  149  3e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  41.2 
 
 
219 aa  147  9e-35  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  40 
 
 
216 aa  147  1.0000000000000001e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  39.34 
 
 
215 aa  147  1.0000000000000001e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  38.81 
 
 
219 aa  145  4.0000000000000006e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  41.01 
 
 
257 aa  145  6e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  39.15 
 
 
215 aa  144  1e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  41.12 
 
 
213 aa  144  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  42.18 
 
 
225 aa  144  1e-33  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  40.09 
 
 
215 aa  142  4e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  39.72 
 
 
235 aa  142  5e-33  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  41.67 
 
 
220 aa  142  5e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  40.38 
 
 
218 aa  141  8e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  39.81 
 
 
213 aa  140  9.999999999999999e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  43.78 
 
 
228 aa  140  9.999999999999999e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  42.65 
 
 
220 aa  140  9.999999999999999e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  38.5 
 
 
213 aa  140  1.9999999999999998e-32  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  41.23 
 
 
209 aa  139  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.28 
 
 
213 aa  140  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  39.81 
 
 
213 aa  140  1.9999999999999998e-32  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  41.71 
 
 
216 aa  139  3e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.76 
 
 
211 aa  139  3.9999999999999997e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  42.59 
 
 
216 aa  138  7e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  43.98 
 
 
223 aa  137  1e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  41.01 
 
 
228 aa  135  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.55 
 
 
239 aa  135  5e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  42.11 
 
 
222 aa  135  6.0000000000000005e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  42.02 
 
 
215 aa  134  9.999999999999999e-31  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  37.67 
 
 
220 aa  133  1.9999999999999998e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2502  response regulator receiver protein  42.52 
 
 
233 aa  132  3e-30  Frankia sp. EAN1pec  Bacteria  normal  0.0151359  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  37.5 
 
 
214 aa  130  1.0000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  36.49 
 
 
815 aa  130  2.0000000000000002e-29  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  40.64 
 
 
226 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  38.79 
 
 
218 aa  129  3e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  37.5 
 
 
222 aa  128  7.000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  34.12 
 
 
214 aa  128  9.000000000000001e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  40.87 
 
 
212 aa  127  9.000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  37.62 
 
 
221 aa  127  1.0000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  36.28 
 
 
228 aa  127  1.0000000000000001e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  33.65 
 
 
214 aa  126  3e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  38.32 
 
 
214 aa  124  1e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  36.06 
 
 
233 aa  123  2e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  31.6 
 
 
215 aa  123  2e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  36.7 
 
 
228 aa  122  5e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  35 
 
 
224 aa  117  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  37.5 
 
 
226 aa  116  1.9999999999999998e-25  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  31.28 
 
 
211 aa  107  1e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  32.16 
 
 
213 aa  106  2e-22  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  37.25 
 
 
218 aa  105  5e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0681  two component transcriptional regulator, LuxR family  34.12 
 
 
223 aa  105  5e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000015615 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  35.64 
 
 
224 aa  103  2e-21  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
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