More than 300 homologs were found in PanDaTox collection
for query gene Franean1_5808 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_5808  two component LuxR family transcriptional regulator  100 
 
 
146 aa  291  2e-78  Frankia sp. EAN1pec  Bacteria  normal  0.812897  normal 
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  57.66 
 
 
214 aa  114  6e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  54.87 
 
 
215 aa  112  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  55.86 
 
 
218 aa  112  2.0000000000000002e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  53.51 
 
 
218 aa  111  4.0000000000000004e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  49.12 
 
 
215 aa  110  6e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  54.39 
 
 
218 aa  110  8.000000000000001e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  54.05 
 
 
221 aa  108  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  54.21 
 
 
214 aa  108  2.0000000000000002e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  47.1 
 
 
220 aa  108  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  54.05 
 
 
213 aa  108  2.0000000000000002e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  51.33 
 
 
226 aa  108  2.0000000000000002e-23  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  58.93 
 
 
235 aa  108  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  52.89 
 
 
214 aa  108  3e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  55.36 
 
 
213 aa  107  4.0000000000000004e-23  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  53.15 
 
 
217 aa  107  5e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  50.83 
 
 
217 aa  107  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  48.67 
 
 
243 aa  106  9.000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  54.39 
 
 
226 aa  106  9.000000000000001e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  50.44 
 
 
215 aa  105  2e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  54.05 
 
 
218 aa  104  3e-22  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  49.56 
 
 
214 aa  105  3e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  50.44 
 
 
220 aa  105  3e-22  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  49.56 
 
 
212 aa  104  4e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  52.21 
 
 
213 aa  104  4e-22  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  53.27 
 
 
228 aa  104  4e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  54.63 
 
 
226 aa  104  5e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  51.33 
 
 
214 aa  103  8e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  47.37 
 
 
215 aa  103  9e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  51.35 
 
 
215 aa  103  9e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  54.55 
 
 
214 aa  101  4e-21  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  50.47 
 
 
220 aa  101  4e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  50.45 
 
 
218 aa  101  4e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  47.9 
 
 
219 aa  100  8e-21  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  52.68 
 
 
222 aa  99.4  1e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  52.21 
 
 
210 aa  99.8  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  50.44 
 
 
213 aa  99.8  1e-20  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  45.61 
 
 
215 aa  99.8  1e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  51.35 
 
 
213 aa  99.8  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  51.72 
 
 
221 aa  99.4  2e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  48.18 
 
 
218 aa  98.2  3e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  46.15 
 
 
215 aa  98.2  3e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  53.57 
 
 
214 aa  98.2  3e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  51.79 
 
 
213 aa  98.2  3e-20  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.75 
 
 
217 aa  97.8  4e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  54.87 
 
 
222 aa  97.8  4e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  49.55 
 
 
214 aa  97.8  4e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  42.75 
 
 
219 aa  97.4  5e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  46.9 
 
 
223 aa  97.4  6e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  49.55 
 
 
216 aa  97.4  6e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  51.35 
 
 
223 aa  97.1  7e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.15 
 
 
239 aa  97.1  8e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  52.21 
 
 
216 aa  96.3  1e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  50.88 
 
 
209 aa  96.3  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  45.86 
 
 
228 aa  94.7  3e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  51.35 
 
 
242 aa  95.1  3e-19  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  47.79 
 
 
215 aa  95.1  3e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  48.65 
 
 
218 aa  94.7  4e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  48.67 
 
 
219 aa  94.4  5e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  53.15 
 
 
214 aa  94  6e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  50 
 
 
221 aa  93.6  7e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  46.9 
 
 
215 aa  93.6  8e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.49 
 
 
218 aa  93.6  9e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  47.79 
 
 
213 aa  93.2  9e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  46.49 
 
 
211 aa  92.8  1e-18  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  46.49 
 
 
214 aa  92.8  2e-18  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  46.49 
 
 
209 aa  92.8  2e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  46.49 
 
 
214 aa  92.8  2e-18  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  52.21 
 
 
225 aa  91.7  3e-18  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  46.43 
 
 
217 aa  90.1  1e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  46.49 
 
 
214 aa  90.1  1e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  50.45 
 
 
215 aa  89.4  1e-17  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  45.95 
 
 
214 aa  89  2e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  50.45 
 
 
212 aa  89  2e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  45.45 
 
 
216 aa  89  2e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  45.05 
 
 
214 aa  88.2  3e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  45.61 
 
 
221 aa  88.6  3e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  50 
 
 
233 aa  88.2  3e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  45.54 
 
 
214 aa  87.4  5e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.14 
 
 
213 aa  86.7  1e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  46.46 
 
 
208 aa  86.3  1e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  48.67 
 
 
218 aa  86.7  1e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  48.36 
 
 
463 aa  85.5  2e-16  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  48.65 
 
 
216 aa  85.5  2e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  45.22 
 
 
220 aa  84.7  4e-16  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.6 
 
 
211 aa  82.4  0.000000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  45 
 
 
220 aa  81.6  0.000000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  43.48 
 
 
228 aa  80.9  0.000000000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  45.95 
 
 
229 aa  80.9  0.000000000000006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  52.25 
 
 
228 aa  79.7  0.00000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  43.86 
 
 
218 aa  75.5  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  41.59 
 
 
815 aa  72.8  0.000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  41.13 
 
 
224 aa  72  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  39.34 
 
 
224 aa  72  0.000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  37.07 
 
 
222 aa  71.6  0.000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  42.06 
 
 
224 aa  71.2  0.000000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.75 
 
 
226 aa  70.9  0.000000000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  40.54 
 
 
215 aa  71.2  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  39.82 
 
 
228 aa  70.5  0.000000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  32.23 
 
 
228 aa  69.3  0.00000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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