More than 300 homologs were found in PanDaTox collection
for query gene Franean1_6494 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  100 
 
 
235 aa  462  1e-129  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  54.5 
 
 
222 aa  213  2.9999999999999995e-54  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  52.25 
 
 
228 aa  204  8e-52  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  53.7 
 
 
218 aa  204  1e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  49.11 
 
 
226 aa  192  3e-48  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  51.39 
 
 
220 aa  192  3e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  50.92 
 
 
214 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  50.23 
 
 
218 aa  192  4e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  50 
 
 
215 aa  192  4e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  49.3 
 
 
216 aa  191  1e-47  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  48.85 
 
 
214 aa  187  1e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  51.63 
 
 
213 aa  187  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  48.39 
 
 
215 aa  186  2e-46  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  49.3 
 
 
217 aa  185  6e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  49.77 
 
 
214 aa  185  6e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  49.31 
 
 
220 aa  185  6e-46  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  50.67 
 
 
233 aa  185  7e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  49.3 
 
 
217 aa  182  3e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  46.76 
 
 
218 aa  182  3e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  50 
 
 
212 aa  182  3e-45  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  49.31 
 
 
214 aa  182  3e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  46.36 
 
 
243 aa  182  3e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  51.14 
 
 
221 aa  182  6e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  50.23 
 
 
215 aa  182  6e-45  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  48.86 
 
 
216 aa  181  6e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  50.45 
 
 
226 aa  181  7e-45  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  50.23 
 
 
213 aa  181  8.000000000000001e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  49.3 
 
 
224 aa  181  1e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  50.91 
 
 
226 aa  180  2e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  52.31 
 
 
225 aa  179  2.9999999999999997e-44  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  50.91 
 
 
228 aa  179  4e-44  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  46.76 
 
 
215 aa  179  4.999999999999999e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  46.51 
 
 
214 aa  179  4.999999999999999e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  50.23 
 
 
213 aa  178  8e-44  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  45.95 
 
 
223 aa  177  8e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  48.42 
 
 
219 aa  177  1e-43  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  50 
 
 
220 aa  177  1e-43  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  49.08 
 
 
215 aa  176  2e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  48.39 
 
 
215 aa  177  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  50.46 
 
 
214 aa  176  3e-43  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  48.15 
 
 
214 aa  175  4e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  48.4 
 
 
215 aa  175  5e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  47.25 
 
 
221 aa  175  5e-43  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  48.37 
 
 
210 aa  175  6e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  50 
 
 
213 aa  174  8e-43  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  45.66 
 
 
215 aa  174  9.999999999999999e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  46.33 
 
 
217 aa  173  1.9999999999999998e-42  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  50.23 
 
 
209 aa  173  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  50.46 
 
 
214 aa  172  2.9999999999999996e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  48.66 
 
 
220 aa  172  2.9999999999999996e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  47.93 
 
 
218 aa  172  3.9999999999999995e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  47.22 
 
 
218 aa  171  5.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  47.53 
 
 
219 aa  171  6.999999999999999e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.58 
 
 
213 aa  171  1e-41  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  46.54 
 
 
214 aa  169  4e-41  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  47.91 
 
 
213 aa  168  8e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  45.62 
 
 
219 aa  167  1e-40  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  48.17 
 
 
213 aa  167  1e-40  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  47 
 
 
218 aa  167  1e-40  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.36 
 
 
217 aa  167  1e-40  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  49.54 
 
 
222 aa  166  4e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  48.64 
 
 
257 aa  165  5e-40  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  45.45 
 
 
221 aa  164  8e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.06 
 
 
218 aa  164  1.0000000000000001e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  46.79 
 
 
213 aa  164  1.0000000000000001e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  48.13 
 
 
242 aa  163  2.0000000000000002e-39  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  45.16 
 
 
229 aa  162  3e-39  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  44.24 
 
 
214 aa  162  5.0000000000000005e-39  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  44.24 
 
 
214 aa  162  5.0000000000000005e-39  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  45.79 
 
 
209 aa  162  6e-39  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  44.7 
 
 
815 aa  160  1e-38  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  45.58 
 
 
215 aa  160  1e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  44.74 
 
 
228 aa  160  2e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  50 
 
 
215 aa  160  2e-38  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  46.85 
 
 
218 aa  159  3e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  49.07 
 
 
208 aa  159  4e-38  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  43.93 
 
 
211 aa  157  1e-37  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  47.37 
 
 
223 aa  156  2e-37  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  45.87 
 
 
214 aa  156  3e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  51.63 
 
 
216 aa  153  2e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  49.31 
 
 
214 aa  152  2.9999999999999998e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.27 
 
 
239 aa  152  4e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.12 
 
 
211 aa  152  5e-36  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  49.33 
 
 
228 aa  150  2e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  44.55 
 
 
220 aa  150  2e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  46.33 
 
 
216 aa  149  5e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.72 
 
 
226 aa  148  8e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  45.05 
 
 
221 aa  147  1.0000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  49.13 
 
 
214 aa  145  4.0000000000000006e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  44.64 
 
 
239 aa  144  1e-33  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  43.24 
 
 
218 aa  144  1e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  47.2 
 
 
212 aa  142  3e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  39.72 
 
 
218 aa  142  6e-33  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  41.4 
 
 
214 aa  142  7e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  44.51 
 
 
463 aa  125  5e-28  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  39.74 
 
 
220 aa  119  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  38.12 
 
 
214 aa  120  3e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  38.31 
 
 
213 aa  119  3.9999999999999996e-26  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  38.72 
 
 
226 aa  118  9.999999999999999e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  40.26 
 
 
225 aa  118  9.999999999999999e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
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