More than 300 homologs were found in PanDaTox collection
for query gene Mnod_2525 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_2525  3-hydroxyisobutyrate dehydrogenase  100 
 
 
295 aa  588  1e-167  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.927103  n/a   
 
 
-
 
NC_007964  Nham_2556  3-hydroxyisobutyrate dehydrogenase  60.68 
 
 
299 aa  364  1e-99  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2156  3-hydroxyisobutyrate dehydrogenase  60 
 
 
299 aa  358  8e-98  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.501348 
 
 
-
 
NC_009667  Oant_1870  3-hydroxyisobutyrate dehydrogenase  62.46 
 
 
296 aa  354  1e-96  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2122  3-hydroxyisobutyrate dehydrogenase  60.62 
 
 
295 aa  350  1e-95  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.337883  normal 
 
 
-
 
NC_007958  RPD_3299  3-hydroxyisobutyrate dehydrogenase  61.64 
 
 
295 aa  348  6e-95  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.241837  normal  0.0981124 
 
 
-
 
NC_012858  Rleg_6723  3-hydroxyisobutyrate dehydrogenase  59.73 
 
 
293 aa  348  7e-95  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.216228  normal 
 
 
-
 
NC_011366  Rleg2_5817  3-hydroxyisobutyrate dehydrogenase  59.93 
 
 
293 aa  347  9e-95  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0885665 
 
 
-
 
NC_007925  RPC_3091  3-hydroxyisobutyrate dehydrogenase  60.75 
 
 
295 aa  346  2e-94  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.207365 
 
 
-
 
NC_009505  BOV_1276  3-hydroxyisobutyrate dehydrogenase  60.75 
 
 
296 aa  346  3e-94  Brucella ovis ATCC 25840  Bacteria  normal  0.476211  n/a   
 
 
-
 
NC_004310  BR1314  3-hydroxyisobutyrate dehydrogenase  60.54 
 
 
296 aa  345  4e-94  Brucella suis 1330  Bacteria  normal  0.848516  n/a   
 
 
-
 
NC_009620  Smed_4243  3-hydroxyisobutyrate dehydrogenase  63.1 
 
 
298 aa  338  4e-92  Sinorhizobium medicae WSM419  Bacteria  normal  0.519219  normal 
 
 
-
 
NC_008254  Meso_1308  3-hydroxyisobutyrate dehydrogenase  57.59 
 
 
294 aa  338  7e-92  Chelativorans sp. BNC1  Bacteria  normal  0.258741  n/a   
 
 
-
 
NC_011886  Achl_0632  3-hydroxyisobutyrate dehydrogenase  58.78 
 
 
319 aa  337  9.999999999999999e-92  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_2189  3-hydroxyisobutyrate dehydrogenase  62.96 
 
 
314 aa  335  5e-91  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.276186 
 
 
-
 
NC_013169  Ksed_22120  3-hydroxyisobutyrate dehydrogenase  58.56 
 
 
296 aa  328  8e-89  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.218091 
 
 
-
 
NC_011004  Rpal_3935  3-hydroxyisobutyrate dehydrogenase  57.53 
 
 
295 aa  320  1.9999999999999998e-86  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2177  3-hydroxyisobutyrate dehydrogenase  59.79 
 
 
296 aa  319  3.9999999999999996e-86  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.279609  n/a   
 
 
-
 
NC_008541  Arth_0422  3-hydroxyisobutyrate dehydrogenase  53.69 
 
 
313 aa  315  7e-85  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0615  3-hydroxyisobutyrate dehydrogenase  56.16 
 
 
295 aa  313  2.9999999999999996e-84  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.789024  normal 
 
 
-
 
NC_014158  Tpau_3068  3-hydroxyisobutyrate dehydrogenase  52.41 
 
 
289 aa  310  1e-83  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3581  3-hydroxyisobutyrate dehydrogenase  59.45 
 
 
296 aa  310  1e-83  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.371454 
 
 
-
 
NC_010511  M446_2479  3-hydroxyisobutyrate dehydrogenase  59.66 
 
 
296 aa  310  1e-83  Methylobacterium sp. 4-46  Bacteria  normal  0.766336  normal  0.288256 
 
 
-
 
NC_009338  Mflv_5012  3-hydroxyisobutyrate dehydrogenase  53.95 
 
 
290 aa  308  8e-83  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.210845  normal  0.196211 
 
 
-
 
NC_010505  Mrad2831_3782  3-hydroxyisobutyrate dehydrogenase  60.55 
 
 
297 aa  307  1.0000000000000001e-82  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1078  3-hydroxyisobutyrate dehydrogenase  53.45 
 
 
290 aa  306  3e-82  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0733755 
 
 
-
 
NC_008146  Mmcs_1062  3-hydroxyisobutyrate dehydrogenase  53.45 
 
 
290 aa  306  3e-82  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1089  3-hydroxyisobutyrate dehydrogenase  53.1 
 
 
290 aa  304  1.0000000000000001e-81  Mycobacterium sp. JLS  Bacteria  normal  0.0903415  normal 
 
 
-
 
NC_009719  Plav_2900  3-hydroxyisobutyrate dehydrogenase  51.19 
 
 
296 aa  295  9e-79  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.287224  hitchhiker  0.0000517661 
 
 
-
 
NC_008044  TM1040_1101  3-hydroxyisobutyrate dehydrogenase  52.58 
 
 
290 aa  291  1e-77  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10765  3-hydroxyisobutyrate dehydrogenase mmsB  52.54 
 
 
294 aa  288  6e-77  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  6.17463e-32  normal 
 
 
-
 
NC_008726  Mvan_1360  3-hydroxyisobutyrate dehydrogenase  52.07 
 
 
290 aa  286  2.9999999999999996e-76  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.117709  normal 
 
 
-
 
NC_008347  Mmar10_1542  3-hydroxyisobutyrate dehydrogenase  51.53 
 
 
297 aa  285  5e-76  Maricaulis maris MCS10  Bacteria  normal  0.0206535  normal 
 
 
-
 
NC_013441  Gbro_3900  3-hydroxyisobutyrate dehydrogenase  51.38 
 
 
289 aa  285  9e-76  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0625  3-hydroxyisobutyrate dehydrogenase  61.82 
 
 
299 aa  285  9e-76  Acidiphilium cryptum JF-5  Bacteria  normal  0.960908  n/a   
 
 
-
 
NC_009428  Rsph17025_1337  3-hydroxyisobutyrate dehydrogenase  54.08 
 
 
290 aa  285  9e-76  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0431672  normal 
 
 
-
 
NC_006368  lpp0142  hypothetical protein  47.81 
 
 
298 aa  280  2e-74  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0127  hypothetical protein  47.81 
 
 
298 aa  277  2e-73  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_1787  3-hydroxyisobutyrate dehydrogenase  54.3 
 
 
290 aa  274  2.0000000000000002e-72  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.426643  normal 
 
 
-
 
NC_007493  RSP_0154  3-hydroxyisobutyrate dehydrogenase  54.3 
 
 
290 aa  273  3e-72  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0861  3-hydroxyisobutyrate dehydrogenase  49.31 
 
 
289 aa  266  4e-70  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3050  3-hydroxyisobutyrate dehydrogenase  51.19 
 
 
298 aa  265  5e-70  Caulobacter sp. K31  Bacteria  normal  0.0336395  normal 
 
 
-
 
NC_009952  Dshi_1752  3-hydroxyisobutyrate dehydrogenase  53.95 
 
 
291 aa  265  7e-70  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.526559 
 
 
-
 
NC_007802  Jann_1907  3-hydroxyisobutyrate dehydrogenase  53.06 
 
 
290 aa  261  8.999999999999999e-69  Jannaschia sp. CCS1  Bacteria  normal  0.60651  normal 
 
 
-
 
NC_008687  Pden_4482  3-hydroxyisobutyrate dehydrogenase  54.64 
 
 
291 aa  257  2e-67  Paracoccus denitrificans PD1222  Bacteria  normal  0.217481  normal 
 
 
-
 
NC_008048  Sala_3056  3-hydroxyisobutyrate dehydrogenase  48.44 
 
 
291 aa  256  4e-67  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.76812 
 
 
-
 
NC_011138  MADE_01512  3-hydroxyisobutyrate dehydrogenase  48.28 
 
 
291 aa  253  2.0000000000000002e-66  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6083  3-hydroxyisobutyrate dehydrogenase  51.41 
 
 
281 aa  254  2.0000000000000002e-66  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.662698  normal 
 
 
-
 
NC_007643  Rru_A1833  3-hydroxyisobutyrate dehydrogenase  55.71 
 
 
296 aa  248  8e-65  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0647  3-hydroxyisobutyrate dehydrogenase  49.31 
 
 
296 aa  243  3e-63  Sphingomonas wittichii RW1  Bacteria  normal  0.020642  normal 
 
 
-
 
NC_004347  SO_1682  3-hydroxyisobutyrate dehydrogenase  44.41 
 
 
300 aa  238  1e-61  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_1380  3-hydroxyisobutyrate dehydrogenase  46.8 
 
 
301 aa  238  1e-61  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0240977 
 
 
-
 
NC_012803  Mlut_02850  3-hydroxyisobutyrate dehydrogenase  52.03 
 
 
305 aa  237  2e-61  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1148  3-hydroxyisobutyrate dehydrogenase  43.58 
 
 
297 aa  233  2.0000000000000002e-60  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0768  3-hydroxyisobutyrate dehydrogenase  47.96 
 
 
295 aa  233  3e-60  Pseudomonas putida W619  Bacteria  normal  normal  0.600561 
 
 
-
 
NC_009052  Sbal_1500  3-hydroxyisobutyrate dehydrogenase  45.79 
 
 
300 aa  232  5e-60  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2851  3-hydroxyisobutyrate dehydrogenase  45.79 
 
 
300 aa  232  5e-60  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00000128399 
 
 
-
 
NC_009997  Sbal195_1530  3-hydroxyisobutyrate dehydrogenase  45.79 
 
 
300 aa  232  5e-60  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1494  3-hydroxyisobutyrate dehydrogenase  45.79 
 
 
300 aa  232  5e-60  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2778  3-hydroxyisobutyrate dehydrogenase  46.8 
 
 
309 aa  231  1e-59  Shewanella pealeana ATCC 700345  Bacteria  normal  0.104386  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1018  3-hydroxyisobutyrate dehydrogenase  43.24 
 
 
297 aa  230  2e-59  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0223  3-hydroxyisobutyrate dehydrogenase  47.08 
 
 
296 aa  229  3e-59  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.681241  normal 
 
 
-
 
NC_009524  PsycPRwf_0297  3-hydroxyisobutyrate dehydrogenase  41.61 
 
 
309 aa  228  7e-59  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1402  3-hydroxyisobutyrate dehydrogenase  45.42 
 
 
300 aa  228  7e-59  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5129  3-hydroxyisobutyrate dehydrogenase  44.59 
 
 
297 aa  228  8e-59  Burkholderia phymatum STM815  Bacteria  normal  normal  0.468786 
 
 
-
 
NC_007348  Reut_B4259  3-hydroxyisobutyrate dehydrogenase  45.92 
 
 
297 aa  228  1e-58  Ralstonia eutropha JMP134  Bacteria  normal  0.597  n/a   
 
 
-
 
NC_010623  Bphy_4931  3-hydroxyisobutyrate dehydrogenase  42.27 
 
 
293 aa  228  1e-58  Burkholderia phymatum STM815  Bacteria  normal  0.684033  normal 
 
 
-
 
NC_002947  PP_4666  3-hydroxyisobutyrate dehydrogenase  46.6 
 
 
295 aa  227  2e-58  Pseudomonas putida KT2440  Bacteria  normal  0.534341  normal 
 
 
-
 
NC_009512  Pput_4530  3-hydroxyisobutyrate dehydrogenase  46.6 
 
 
295 aa  227  2e-58  Pseudomonas putida F1  Bacteria  normal  0.0233897  normal  0.525566 
 
 
-
 
NC_010322  PputGB1_4664  3-hydroxyisobutyrate dehydrogenase  46.6 
 
 
295 aa  226  4e-58  Pseudomonas putida GB-1  Bacteria  normal  0.128162  normal  0.386359 
 
 
-
 
NC_011992  Dtpsy_1809  3-hydroxyisobutyrate dehydrogenase  46.42 
 
 
295 aa  226  4e-58  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0696  3-hydroxyisobutyrate dehydrogenase  46.42 
 
 
295 aa  226  5.0000000000000005e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3253  3-hydroxyisobutyrate dehydrogenase  45.64 
 
 
300 aa  225  7e-58  Variovorax paradoxus S110  Bacteria  normal  0.337633  n/a   
 
 
-
 
NC_004578  PSPTO_0783  3-hydroxyisobutyrate dehydrogenase  45.24 
 
 
296 aa  225  8e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2005  3-hydroxyisobutyrate dehydrogenase  46.08 
 
 
295 aa  222  4.9999999999999996e-57  Acidovorax sp. JS42  Bacteria  normal  0.848417  normal  0.25929 
 
 
-
 
NC_013457  VEA_001550  3-hydroxyisobutyrate dehydrogenase  42.33 
 
 
301 aa  222  7e-57  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1672  3-hydroxyisobutyrate dehydrogenase  44.97 
 
 
299 aa  221  8e-57  Shewanella loihica PV-4  Bacteria  normal  0.715505  hitchhiker  0.000314937 
 
 
-
 
NC_008786  Veis_3539  3-hydroxyisobutyrate dehydrogenase  45.45 
 
 
299 aa  221  8e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.744262  normal  0.893544 
 
 
-
 
NC_007435  BURPS1710b_A2181  3-hydroxyisobutyrate dehydrogenase  46.53 
 
 
298 aa  221  9.999999999999999e-57  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0921  3-hydroxyisobutyrate dehydrogenase  46.53 
 
 
298 aa  221  9.999999999999999e-57  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0829  3-hydroxyisobutyrate dehydrogenase  46.53 
 
 
298 aa  221  9.999999999999999e-57  Burkholderia pseudomallei 1106a  Bacteria  normal  0.601203  n/a   
 
 
-
 
NC_007336  Reut_C5958  3-hydroxyisobutyrate dehydrogenase  42.47 
 
 
293 aa  219  3e-56  Ralstonia eutropha JMP134  Bacteria  normal  0.564119  n/a   
 
 
-
 
NC_007953  Bxe_C0245  3-hydroxyisobutyrate dehydrogenase  45.14 
 
 
298 aa  220  3e-56  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1322  3-hydroxyisobutyrate dehydrogenase  45.17 
 
 
300 aa  220  3e-56  Arthrobacter sp. FB24  Bacteria  normal  0.172587  n/a   
 
 
-
 
NC_013457  VEA_000370  3-hydroxyisobutyrate dehydrogenase  43.62 
 
 
298 aa  219  3.9999999999999997e-56  Vibrio sp. Ex25  Bacteria  normal  0.81552  n/a   
 
 
-
 
NC_009784  VIBHAR_05487  3-hydroxyisobutyrate dehydrogenase  41.58 
 
 
301 aa  219  3.9999999999999997e-56  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_0690  3-hydroxyisobutyrate dehydrogenase  43.88 
 
 
295 aa  218  7e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1087  3-hydroxyisobutyrate dehydrogenase  45.55 
 
 
301 aa  217  1e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.27752  decreased coverage  0.00698053 
 
 
-
 
NC_010676  Bphyt_5647  3-hydroxyisobutyrate dehydrogenase  45.21 
 
 
304 aa  218  1e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  0.373454  normal  0.924081 
 
 
-
 
NC_007650  BTH_II1800  3-hydroxyisobutyrate dehydrogenase  46.34 
 
 
298 aa  217  2e-55  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2159  3-hydroxyisobutyrate dehydrogenase  45.64 
 
 
308 aa  217  2e-55  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1557  3-hydroxyisobutyrate dehydrogenase  43.77 
 
 
298 aa  216  2.9999999999999998e-55  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.734948  n/a   
 
 
-
 
NC_008345  Sfri_1343  3-hydroxyisobutyrate dehydrogenase  44.3 
 
 
299 aa  216  5e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.383496  n/a   
 
 
-
 
NC_008463  PA14_18140  3-hydroxyisobutyrate dehydrogenase  45.17 
 
 
298 aa  215  5.9999999999999996e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2766  3-hydroxyisobutyrate dehydrogenase  44.75 
 
 
300 aa  215  5.9999999999999996e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2600  3-hydroxyisobutyrate dehydrogenase  45.08 
 
 
299 aa  215  9e-55  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.00798756  normal  0.460632 
 
 
-
 
NC_007951  Bxe_A3575  3-hydroxyisobutyrate dehydrogenase  43.49 
 
 
297 aa  214  9.999999999999999e-55  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2592  3-hydroxyisobutyrate dehydrogenase  44.78 
 
 
300 aa  213  1.9999999999999998e-54  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00101214 
 
 
-
 
NC_008322  Shewmr7_2659  3-hydroxyisobutyrate dehydrogenase  44.41 
 
 
300 aa  213  3.9999999999999995e-54  Shewanella sp. MR-7  Bacteria  normal  0.0234954  normal 
 
 
-
 
NC_012857  Rpic12D_4089  3-hydroxyisobutyrate dehydrogenase  45.55 
 
 
297 aa  211  9e-54  Ralstonia pickettii 12D  Bacteria  normal  0.772372  normal  0.24894 
 
 
-
 
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