Gene Sala_3056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_3056 
Symbol 
ID4082905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp3206592 
End bp3207467 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content67% 
IMG OID638011442 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_618093 
Protein GI103488532 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01692] 3-hydroxyisobutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.76812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCG CCTTTATCGG ACTCGGCAAC ATGGGCGGCG GGATGGCCGC GAACCTTGCG 
AAGGCGGGGC ATGACGTGCG CGCTTACGAC CTCAGCGAAG AGGCGTTGAC GCGCGCAGCC
GATGCGGGCT GTTCGCGCGC GGCATCGGCG GCCGAAGCGG TGACCGGCGC CGAGGCCGTC
GTTACCATGC TCCCCGCGGG CACGCATGTC GCGGGTGTTT ATGAAAACGA CGTCTTTCCG
AACGCTGCGC CGGGCACGCT GCTCCTCGAC TGCTCGACGA TCGACGTCGC GACCGCGCGC
TCGAACATCG AGGCCGCGAC CGCCAAGGGC CTCGTTGCGG TCGATGCGCC GGTGTCGGGC
GGCATCGCCG CCGCCAATGC CGGCACGCTG ACCTTCATGG TCGGCGGCAC CGAAGAAGGC
TTTGCGCGCG CGCAGCCGAT CCTTGCCAAA ATGGGCAAGG CGGTGATCCA CGCGGGCGAT
GCGGGCGCGG GGCAGGCGGC GAAGATCTGC AACAACATGC TGCTCGGCGC GTCGATGGTC
GCAACGTGCG AGACGCTCGC GCTCGCGCAG AAACTCGGGC TCGATCCGCA AAAATTCTTC
GACATCGCTA GCGTCTCGTC GGGGCAATGC TGGTCGCTGA CCAGCTATGC GCCGCTCCCC
GGCGTCGGTC CGGTCACGCC CGCCGACAAT GATTACAAGG GCGGGTTTGC CGCGGCGCTG
ATGCTCAAGG ATCTGCGTCT CGCGATGGAA GCGGCGGCGA GCGTCAACGC CGACGTGCCG
ATGGGGACGA AAGCGCGCGA GCTATACGAA GCCTTTGTCG AAGCCGACAA GGACGGTCGC
GACTTTTCGG CGATCATCCG GACATTGCAG GGCTGA
 
Protein sequence
MKIAFIGLGN MGGGMAANLA KAGHDVRAYD LSEEALTRAA DAGCSRAASA AEAVTGAEAV 
VTMLPAGTHV AGVYENDVFP NAAPGTLLLD CSTIDVATAR SNIEAATAKG LVAVDAPVSG
GIAAANAGTL TFMVGGTEEG FARAQPILAK MGKAVIHAGD AGAGQAAKIC NNMLLGASMV
ATCETLALAQ KLGLDPQKFF DIASVSSGQC WSLTSYAPLP GVGPVTPADN DYKGGFAAAL
MLKDLRLAME AAASVNADVP MGTKARELYE AFVEADKDGR DFSAIIRTLQ G