Gene Rpal_3935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3935 
Symbol 
ID6411616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4223146 
End bp4224033 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content67% 
IMG OID642713816 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_001992906 
Protein GI192292301 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01692] 3-hydroxyisobutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGATA TCGCATTCAT CGGTCTCGGC AATATGGGCG GGCCGATGGC GGGCAATCTC 
GCCAAGGCCG GCCGTAAGGT CGCCGGTTTC GATCTGGTGG CGGCCTCGTG CGAGGCGGCG 
AAGGCCGAAG GCGTCAGCAT CGCGCCGACC GCGATCGATG CGGTGAAGGG CGCCGGCGTC 
ATCGTCACCA TGCTGCCGGC CGGCAAGCAC GTGCTGGCGG TCTGGAACGA GATCCTGCCG 
CATGCCGCCA AGGGCGCGCT GATCATCGAT TGCTCGACCA TCGACGTCGA AAGCGCCGTG 
CAGGCGCACG CGCTCGCCGC CAAGCACGAC ATCGCTTCGG TCGATGCGCC GGTCTCCGGC 
GGCACCGGCG GCGCCAAGGG CGCGACGCTC ACCTTTATGG CCGGCGGCAG CGAGGCCGCG 
TTCGCGGCGG CGAAGCCCGT GCTCGAGCAG ATGGGCAAGA AGATCGTGCA TTGCGGCGGC 
GCCGGCGCCG GCCAGGCGGC AAAGATCTGC AACAACATGA TCCTCGGCAT CTCGATGATC 
GGCGTGTCGG AGGCGTTCAC GCTCGCCGAG AAGCTCGGGC TGTCGCATCA GGCGCTGTTC 
GATGTCGCGT CGACCTCATC AGGGCAGTGC TGGTCGCTGA CCAGCTATTG CCCGGTGCCC 
GGCCCGGTGC CGGCTTCACC CGCCAACAAC AGCTACAAGC CCGGTTTCGC TGCGGCGCTG 
ATGTTGAAGG ACCTGAAGCT GTCGCAGGAA GCCGCCAAGG CCGCCGGTGC CTCGACCCCG 
CTCGGCCAGC ACGCCGCCGA GATCTACGCC GCGTTCGAAC AAGCCGGCCA CGGCGGCACG 
GATTTTTCCG GAATCATCAA TTACCTGCGC GAGCAGGGGC GGAAGTAA
 
Protein sequence
MTDIAFIGLG NMGGPMAGNL AKAGRKVAGF DLVAASCEAA KAEGVSIAPT AIDAVKGAGV 
IVTMLPAGKH VLAVWNEILP HAAKGALIID CSTIDVESAV QAHALAAKHD IASVDAPVSG 
GTGGAKGATL TFMAGGSEAA FAAAKPVLEQ MGKKIVHCGG AGAGQAAKIC NNMILGISMI 
GVSEAFTLAE KLGLSHQALF DVASTSSGQC WSLTSYCPVP GPVPASPANN SYKPGFAAAL 
MLKDLKLSQE AAKAAGASTP LGQHAAEIYA AFEQAGHGGT DFSGIINYLR EQGRK