| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1672 |
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| Symbol | |
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| ID | 4920521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1922046 |
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| End bp | 1922945 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163234 |
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| Product | 3-hydroxyisobutyrate dehydrogenase |
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| Protein accession | YP_001093798 |
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| Protein GI | 127512601 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
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| TIGRFAM ID | [TIGR01692] 3-hydroxyisobutyrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.715505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000314937 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATACAG TTGCATTTAT CGGATTAGGT AACATGGGTG GCCCGATGGC GGTCAACCTG
GTGAAGGCTG GCTACACGGT TAAGGCCTTC GATCTCTCTC AGACGGCCCT GAGCCATGTG
GTCGAGGAGG GTGCCATGCA GGCACCGAGT GCCTGTGCGG CAGCGGCGGC GGCCGATGTG
GTGATCACAA TGTTGCCTGC GGGCAAGCAT GTGCGCAGTC TCTATCTGGG AGACGAGCAG
AACAAAGGCA TCATAGATGT GGTGGCCGAC GGCACCCTGC TCATCGACTG TTCTACCATA
GACGCCGAGA GCGCACGTTT CGTCGCCGAG CAGGCCAAGA CCAAGGGGCT GGAGTTTATC
GACGCGCCGG TATCGGGCGG CACGGCCGGT GCAGCGGCCG GAACCCTGAC CTTCATCTGT
GGCGGCAGCG ATACCGCTTT CGAGCAGGCC CAGGGCGTGC TGAATGTTAT GGGTGCCAAT
ATCTTCCACG CCGGCGGCCC GGGTGCCGGT CAGGTGGCCA AGATCTGTAA CAACATGCTG
CTGTCTGTTT TGATGGTTGG CACCAGCGAG TCGATTCAGA TGGGGATCGA CCACGGACTG
GATCCTAAGG TGCTCTCAGA GATCATGAAG GTCAGTAGTG GTGGTAATTG GACGCTAGAT
AAATATAATC CTTGTCCAGA TGTGATGGAA AACGTGCCAT CATCAAATGG TTACCAGGGT
GGATTCATGG TTGATCTCAT GGTGAAAGAC TTAGGTCTGT CCCAGGAGGC GGCCTTGCTC
TCTAACTCGA GCACCCCAAT GGGCGCCTTG GCCCGTAGCC TGTACGTGAA TCATGCCCGT
CAGGGCAATG GTAAGCGTGA TTTCTCCAGT ATTTTTGAGC AGTTTAATAA AAAAGGGTAA
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| Protein sequence | MNTVAFIGLG NMGGPMAVNL VKAGYTVKAF DLSQTALSHV VEEGAMQAPS ACAAAAAADV
VITMLPAGKH VRSLYLGDEQ NKGIIDVVAD GTLLIDCSTI DAESARFVAE QAKTKGLEFI
DAPVSGGTAG AAAGTLTFIC GGSDTAFEQA QGVLNVMGAN IFHAGGPGAG QVAKICNNML
LSVLMVGTSE SIQMGIDHGL DPKVLSEIMK VSSGGNWTLD KYNPCPDVME NVPSSNGYQG
GFMVDLMVKD LGLSQEAALL SNSSTPMGAL ARSLYVNHAR QGNGKRDFSS IFEQFNKKG
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